Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g439 ATGTTTGTGTTTGGGTTCATAATTAAACCCTCGCGTTCGTGTTTGTCTCCCTCTTTCTCCTCACACTCTCTCTGCGGACGCATTTTCACAGGGGTAAATATGGCTTTGCCTAATCAGCAGACTGTTGACTACCCAAGTTTCAAGCTTGTAATCGTCGGGGATGGTGGAACAGGAAAAACAACATTTGTTAAAAGACATCTTACAGGCGAGTTTGAGAAAAAATATGAACCAACCATTGGTGTGGAAGTTCATCCGCTGGATTTCTTCACAAACTGTGGTAAGATTAGATTCTATTGCTGGGACACTGCTGGGCAGGAGAAGTTTGGTGGTCTTAGAGATGGATATTACATCCATGGGCAATGTGCCATTATCATGTTTGATGTTACTGCTCGCTTGACATACAAGAATGTTCCAACATGGCACCGTGATCTTTGCCGGGTTTGTGAAAATATCCCCATTGTGCTTTGTGGTAACAAGGTTGATGTCAAGAACAGGCAGGTGAAGGCAAAGCAGGTTACTTTCCACCGGAAGAAGAATTTGCAGTATTATGAGATATCAGCTAAGAGCAATTATAATTTTGAGAAGCCTTTTCTCTACCTCGCCAGGAAACTTGCTGGGGATCCTAATTTGCATTTTGTCGAGTCTCCTGCTCTAGCTCCTCCGGAAGTTCACATCGACTTGGCTGCACAGCAACAGCATGAGGCTGAACTTGCTGCAGCTGCTAGTCAACCCCTTCCAGATGACGATGATGATGCGTTTGAATAG 765 44.31 MFVFGFIIKPSRSCLSPSFSSHSLCGRIFTGVNMALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVHIDLAAQQQHEAELAAAASQPLPDDDDDAFE* 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4516353 4521501 + Vvi4g439 Vvi4g439 785218

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g439 254 MobiDBLite consensus disorder prediction 233 254 - -
Vvi4g439 254 Pfam Ras family 48 204 IPR001806 GO:0003924|GO:0005525
Vvi4g439 254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 227 IPR027417 -
Vvi4g439 254 SMART rho_sub_3 49 203 IPR001806 GO:0003924|GO:0005525
Vvi4g439 254 ProSiteProfiles small GTPase Ran family profile. 40 204 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vvi4g439 254 CDD Ran 47 212 - -
Vvi4g439 254 Gene3D - 35 252 IPR027417 -
Vvi4g439 254 PANTHER GTP-BINDING NUCLEAR PROTEIN 21 254 - -
Vvi4g439 254 TIGRFAM small_GTP: small GTP-binding protein domain 47 197 IPR005225 GO:0005525
Vvi4g439 254 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 60 74 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vvi4g439 254 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 107 125 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vvi4g439 254 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 127 148 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vvi4g439 254 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 163 181 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vvi4g439 254 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 201 223 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vvi4g439 254 SMART ran_sub_2 52 253 - -
Vvi4g439 254 ProSiteProfiles small GTPase Rab1 family profile. 41 254 - -
Vvi4g439 254 SMART ras_sub_4 44 207 - -
Vvi4g439 254 SMART rab_sub_5 47 207 - -
Vvi4g439 254 PANTHER RAN GTPASE 21 254 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vvi4g439 254 ProSiteProfiles small GTPase Ras family profile. 38 238 IPR001806 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g439 K07936 RAN; GTP-binding nuclear protein Ran - vvi:100250818 455.677
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g439 Vvi11g422 ECH
Vvi4g439 Vvi9g477 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g439 . Blo12g01085 . Bda03g00062 . Bpe02g00576 Bma04g00060 . . Cmo12g00273 . . . . Sed08g0705 . . Bhi04g01002 Tan02g2699 Cmetu02g1205 . Hepe10g0272 . Lcy13g1760 . . . . . . . Cone4ag1810 Cone7ag1720 Cone17ag1037 Cone20ag0661 . . . Cme03g01644 . . . . . . . . . . . . Cma12g00321 . . . . . . . . . . . . . . . . . . . . Chy03g01146 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000590 3 3 3 1 2 4 3 4 4 1 4 4 3 4 4 6 4 5 3 4 4 2 3 3 1 3 4 6 5 4 104