Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g440 ATGCCATTTTGTTACAATAATAATTATTGCTATTTTATAAAATCAAAGAAAATTGTAATTACAAAACTATTTCGGGATCTAATCCAACGGTTGAGAGAAATAGCGTCCATCAAAGGCTATAATGAAAACACGCGGCGCCTACTTATATATATACGGCTAAAACTCCTACTACCACCGCATTCAAAACTCAAACCTTCTTTCCAAAGCGCTCCTTGGCGGCTTCCATACGAGAAACTCACGCTCACCCTCCAGATGGCGCTTCCAAATCAGCAAACTGTGGATTACCCTAGCTTCAAGCTCGTGATTGTCGGTGATGGCGGAACAGGAAAGACTACATTTGTGAAACGGCATCTCACTGGAGAGTTTGAGAAGAAATATGAGCCAACCATTGGTGTGGAAGTTCACCCATTGGACTTCTTCACAAACTGTGGAAAGATCAGGTTCTATTGCTGGGATACAGCTGGGCAGGAAAAATTCGGTGGGCTCAGAGATGGATACTATATTCATGGACAGTGTGCCATCATCATGTTTGATGTCACTGCTCGTCTGACATACAAAAATGTTCCAACATGGCATCGGGATCTCTGCAGGGTGTGCGAGAATATTCCAATTGTTTTATGTGGAAACAAGGTGGATGTGAAAAATAGGCAGGTCAAAGCAAAGCAGGTTACTTTCCACAGGAAAAAGAATCTCCAGTACTATGAAATTTCTGCAAAGAGCAATTATAACTTTGAGAAGCCCTTCTTGTACCTTGCTCGAAAACTTGCAGGAGATGTCAATCTCCACTTTGTTGAGTCACCTGCTCTTGCTCCTCCTGAAGTTCAAATTGATATGGCTGCACAAGCTCACCATGAAGCAGAGTTGGCAGCAGCCGCAGCACAACCACTTCCTGATGATGATGATGACACGTTTGAGTAG 918 42.92 MPFCYNNNYCYFIKSKKIVITKLFRDLIQRLREIASIKGYNENTRRLLIYIRLKLLLPPHSKLKPSFQSAPWRLPYEKLTLTLQMALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDVNLHFVESPALAPPEVQIDMAAQAHHEAELAAAAAQPLPDDDDDTFE* 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4521974 4526248 + Vvi4g440 Vvi4g440 785219

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g440 305 Gene3D - 87 303 IPR027417 -
Vvi4g440 305 ProSiteProfiles small GTPase Rab1 family profile. 92 294 - -
Vvi4g440 305 PANTHER GTP-BINDING NUCLEAR PROTEIN 59 305 - -
Vvi4g440 305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 274 IPR027417 -
Vvi4g440 305 SMART rab_sub_5 98 258 - -
Vvi4g440 305 ProSiteProfiles small GTPase Ran family profile. 91 255 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vvi4g440 305 CDD Ran 98 263 - -
Vvi4g440 305 PANTHER RAN GTPASE 59 305 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vvi4g440 305 SMART ran_sub_2 103 304 - -
Vvi4g440 305 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 111 125 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vvi4g440 305 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 158 176 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vvi4g440 305 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 178 199 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vvi4g440 305 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 214 232 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vvi4g440 305 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 252 274 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vvi4g440 305 SMART rho_sub_3 100 254 IPR001806 GO:0003924|GO:0005525
Vvi4g440 305 ProSiteProfiles small GTPase Ras family profile. 89 289 IPR001806 GO:0003924|GO:0005525
Vvi4g440 305 SMART ras_sub_4 95 258 - -
Vvi4g440 305 Pfam Ras family 99 255 IPR001806 GO:0003924|GO:0005525
Vvi4g440 305 TIGRFAM small_GTP: small GTP-binding protein domain 98 248 IPR005225 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g440 K07936 RAN; GTP-binding nuclear protein Ran - vvi:100266996 412.149
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g440 Blo01g01374 Blo12g01084 Bda01g00730 Bda03g00063 . . Bma04g00061 . Cmo05g00415 . . Cma05g00404 . Car12g00303 . Cpe07g00282 . . . . . . . . . . . . . . . . . Cone17ag1036 . . . . . . . . . . Bpe04g00049 . . . . . . . . Car05g00338 Cpe11g00344 . . . . . . . . Cla08g01310 Cam08g1770 Cec08g1351 Cco08g1472 Clacu08g1466 . Cre08g1253 Lsi08g01174 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000590 3 3 3 1 2 4 3 4 4 1 4 4 3 4 4 6 4 5 3 4 4 2 3 3 1 3 4 6 5 4 104