Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g441 ATGAAATTCAGGAAAGGGAGTAAAGTGGAGGTATTGAACAAAAAGGAAGTGCCTTCAGGTGCCTGGCACTGTGCTGAAATTATCTCCGGTAATGGGCACAACTACAGTGTTAGGTATGACTCTTATCTGGGCATGACAAATAAGGCGAATGTGGATAGGGTGTCTAGGAAGGCTATTAGACCTTGCCCTCTCCCTGTGAAAGGTATGGAAAGTTGGGTGACTGGTGATGTTGTGGAGGTGTTCAATGATGGTTCTTGGAAATGTGCTATGGTTTTGAAGGTTACATGTGCGGTTTACTATTTGGTTAGGCTACTTGGATCTTGCCACGAATTTGAAGTCCACAAGTCTAACATCAGAGTGCGACAAGCTTGGATAGATGACAAATGGGTTGTGATTGGACAGGGCTCTATCACTTTTGAAGATGTGAGAGTCAACAAGCTGTTAACTTCAAATTGTCATCAGAAGATGAGTTTCCAGGTGCCACAAGCTGATATGAAGCTAAAATTGCAAGCAGGAGATGATTTTTTTCAGAAGCATGCTGATTTCCAGGATTCTCCTATGGTCTCATCCAAGACATTGAAGAGAGCATCCCCATATTGCTCCTCTGGTCTTGAAGCATACTCTGGAAACATTCAGAAGATGAGAGCAATCGAAAATGGTGGACGCCAACGAGTGATCACCGGGTATTCATCTCCATTACGAGCAAAGGTAGATGCTGTTGCTTACCCACGATTGAATCTGGGTGAAAAATACATGCATGCTTCCTTTAATGACCGTTCAACTAAATATTGCGAAATGGAGAGGGGAAAACCAAATGGTGTTGATTGTTTTCTTGCAAGAAGTTCAGAATCTAATGATTCTGATAGCATGTCATGCTCTGTTGGTAGTTGTAGCATTAATAATAATGGTCCTAATAAGTTTTCCAGTTGTATTTTAGCACATCCTAGACAAGATACAGATGACCTTTGTACAGCAAGTATCCATAGTTTAGAGTTGCATGCTTATCGCCGCACTCTAGCGGCATTGCATGCTTCTGGGCCTTTAAGTTGGGAACAATCAACAATGTTGACAAATCTTCGCTGTTCACTTCATATTTCAAATGATGAACATTTGATGGAGCTAAAGAACTTAATATCTGCTGGAATAAATTTTTGTAATTAA 1161 41.0 MKFRKGSKVEVLNKKEVPSGAWHCAEIISGNGHNYSVRYDSYLGMTNKANVDRVSRKAIRPCPLPVKGMESWVTGDVVEVFNDGSWKCAMVLKVTCAVYYLVRLLGSCHEFEVHKSNIRVRQAWIDDKWVVIGQGSITFEDVRVNKLLTSNCHQKMSFQVPQADMKLKLQAGDDFFQKHADFQDSPMVSSKTLKRASPYCSSGLEAYSGNIQKMRAIENGGRQRVITGYSSPLRAKVDAVAYPRLNLGEKYMHASFNDRSTKYCEMERGKPNGVDCFLARSSESNDSDSMSCSVGSCSINNNGPNKFSSCILAHPRQDTDDLCTASIHSLELHAYRRTLAALHASGPLSWEQSTMLTNLRCSLHISNDEHLMELKNLISAGINFCN* 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4535503 4538070 - Vvi4g441 Vvi4g441 785220

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g441 386 SMART agenet_At_2 1 67 IPR014002 -
Vvi4g441 386 SMART agenet_At_2 70 126 IPR014002 -
Vvi4g441 386 Pfam ENT domain 326 376 IPR005491 -
Vvi4g441 386 SMART ENT_2 323 384 IPR005491 -
Vvi4g441 386 SUPERFAMILY ENT-like 323 379 IPR036142 -
Vvi4g441 386 Gene3D ENT domain 317 380 IPR036142 -
Vvi4g441 386 Pfam Agenet domain 6 63 IPR008395 -
Vvi4g441 386 PANTHER PLANT TUDOR-LIKE RNA-BINDING PROTEIN-RELATED 1 271 - -
Vvi4g441 386 ProSiteProfiles EMSY N-terminal (ENT) domain profile. 323 386 IPR005491 -
Vvi4g441 386 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 1 271 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g441 - - - vvi:100264564 651.744
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g441 Vvi11g426 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g441 . Blo12g01083 Bda01g00731 Bda03g00064 . Bpe02g00575 Bma04g00062 . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1809 Cone7ag1719 . . . . . . . . . . . Bpe04g00050 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000990 2 11 1 3 2 2 4 1 2 2 1 2 4 2 2 4 2 2 3 2 2 2 2 1 2 2 2 10 4 2 83