Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g442 ATGCAAACAAGCCCAGCCCATAGCAAACCAGGCCCAAATCACAATCGAGGACCGGTAGGGTTTAAGTTTAACAGCTTCGAGTCCAGTTTTCCAGGAAACTCATCTTCCCCATATCCAAGATACTCCCAAGACACCGTACCCACTTCGCAAATTCACCAAGAAACCACGCCTCTCTCACAAAACCATGTAATAGATGCTCTTCTGTGCCACGTCAATGACCCACAATCAGCTCTGAGATACTTTAAACGGGCCGAAACGCAGCGTGGTTTTATCAGAGGGGTAGATGCCTACTGTGTTTTGCTCCACATTTTGATGCGGTCGCCTGAGACTCATGGACATGCTCGGAAATTGCTTAATCGATATGTCTCGGGTGATTCGGATCCCAGTCCAGTTGTTTTTGTTGATCATCTAATCAACTGCGCAAAAAGGTTCGATTTTGAATTAGATCATCGGGTTTTTAATTATTTGCTAAATGCTTACATTAGGGCCAATCGAATTGAAAATGCAATCGATTGTTTCAATGCGATGATCTGTCAGGATGTGATTCCTTGGGTTCCGTATATGAATATTCTTTTGACTGCTCTGGTTAGGAGAAATATGATTGGGGAATTGCGAGATTTGTATAATAAAATGGTTTTGAGAGGAATATATGGTGATCACTTTACAGTACATGTCATGGTTCGAGCTTGTCTGAAAGAAGGGAGGGTGGAGGAGGCGGAGGAGTATTTTAGGGAAACAAAGGAAAGGGGTGTTAAACTTGATGCAGGGGCATATAGTATTATTATTCAGGCTGTTTGCAAGAAACCAAATTCGAATTTGGGTCTTGAGTTGTTGGAGGAGATGAAAGAGAGGGGGTGGGTTCCTTCAGAGGCCACTTTCACTAGTGTTATTGTTGCTTGTGTGGCACAGGGAAATATGGTGGAGGCTTTAAGGCTAAAGGAGGAGATGATAAATTGTGGGAAGCCGATGAATTTGGTGGTTGCAACGAGTTTAATGAAGGGGTATTGTGCTCAAGGCAATTTGGATAGTGCTTTGAATTTGTTTAATAAGATAACTGAAGATGGACTTTTTCCGAACAAAGTTACATATTCAGTCTTGATTGAAGGTTGCTGTAACAGTGGGAACATTGAAAAGGCTTCTGAACTGTACACTCAAATGAAACTCAATGGTATCCCGCCTAGTGTGTTTAATGTGAATTCCCTATTACGGGGTTACTTGAAAGCTCCATTGTGGGAAGAAGCATCCAAGCTGTTTGATGAAGCGGTTGATTGTGGTGTTGCCAATATTTTTACGTATAATATCATGATGTCGTGGCTATGCAAAGGAGGCAAGATGGATGAAGCTTGCAGTTTATTGGATAATATGGTAAATCAAGGAATGGTACCCAATGTAGTTTCTTACAATGACATGATACTTGGCCACTGCAGGAAAGGGAATATGGATATGGCATCCAGTGTATTCTCAGACATGCTCGCAAGGGATTTGAAACCAAATGTGGTCACTTATTCTATTTTGATAGATGGGAATTTCAAAAAAGGTGATAGTGAAAAAGCCTTAGACTTGTTTGACCAAATGCTGAGCTTAAATATTGCCCCTACTGACTTTACATTTAATACAATTATCAATGGTTTGTGCAAAGTTGGCCAAATGTCAGAGGCAAGGGATAAGCTGAAGAATTTTTTGGAGGAGGGTTTCATTCCAAGCTGTATGACTTACAACAGCATTGTAGATGGATTTATCAAGGAGGGTAACATCGATTCTGCATTGGCTGTTTATAGAGAGATGTGTGAATTTGGAGTTTCCCCAAATGTTGTTACTTACACTAGCTTGATTAATGGGTTCTGCAAAAGTAATAGGATTGATCTCGCTTTGAAAACGCGGGATGAAATGAGAGAAAAGGGTCTTGAATTGGATGTTACAGCATATAGTGCTCTTATTGATGGTTTTTGCAAAAGAAGGGATATGGAAAGTGCACAAGATCTTTTCTTTGAACTCCTTGAAGTTGGCTTATCCCCAAATAGAATTGTTTACAACAGCATGATTAGTGGCTTCAGAGATCTGAATAACATGGAAGCAGCACTTGTTTGGTATAAGAAGATGATCAATGACAGGATTCCTTGTGATTTAGGAACATACACAACTTTGATTGATGGATTGCTGAAAGAAGGTAGACTTGTCTTTGCATCAGATCTTTACATGGAGATGCTTTCCAAGGGTATTGTGCCTGATATTATCACATTTCATGTTCTGGTAAATGGACTTTGCAATAAAGGACAGCTAGAGAATGCACGGAAGATCTTGGAAGAGATGGATAGGAAAAATATGACTCCTAGTGTTCTTATTTATAACACACTGATAGCTGGTTATTTCAGGGAAGGGAATTTGAAAGAGGCTTTTACATTGCATGATGAGATGCTTGACAGAGGCCTTGTACCTGATGATGTAACCTATGATATTCTCATAAATGGAAAGTTCAAAGGAGATCGATCCCTTTCTAGGCCTTCACATGGTTAA 2514 40.21 MQTSPAHSKPGPNHNRGPVGFKFNSFESSFPGNSSSPYPRYSQDTVPTSQIHQETTPLSQNHVIDALLCHVNDPQSALRYFKRAETQRGFIRGVDAYCVLLHILMRSPETHGHARKLLNRYVSGDSDPSPVVFVDHLINCAKRFDFELDHRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILINGKFKGDRSLSRPSHG* 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4539834 4544615 - Vvi4g442 Vvi4g442 785221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g442 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 568 602 IPR002885 -
Vvi4g442 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Vvi4g442 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 532 IPR002885 -
Vvi4g442 837 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 43 830 - -
Vvi4g442 837 MobiDBLite consensus disorder prediction 1 52 - -
Vvi4g442 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
Vvi4g442 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Vvi4g442 837 SUPERFAMILY HCP-like 229 459 - -
Vvi4g442 837 Pfam PPR repeat 529 554 IPR002885 -
Vvi4g442 837 Pfam PPR repeat 427 456 IPR002885 -
Vvi4g442 837 Pfam PPR repeat 564 595 IPR002885 -
Vvi4g442 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Vvi4g442 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 533 567 IPR002885 -
Vvi4g442 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 778 812 IPR002885 -
Vvi4g442 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 428 462 IPR002885 -
Vvi4g442 837 Pfam PPR repeat 292 320 IPR002885 -
Vvi4g442 837 Pfam PPR repeat 676 704 IPR002885 -
Vvi4g442 837 Pfam PPR repeat 189 216 IPR002885 -
Vvi4g442 837 Pfam PPR repeat 152 178 IPR002885 -
Vvi4g442 837 Pfam PPR repeat 399 426 IPR002885 -
Vvi4g442 837 Gene3D Tetratricopeptide repeat domain 630 700 IPR011990 GO:0005515
Vvi4g442 837 Gene3D Tetratricopeptide repeat domain 773 830 IPR011990 GO:0005515
Vvi4g442 837 Gene3D Tetratricopeptide repeat domain 212 285 IPR011990 GO:0005515
Vvi4g442 837 Gene3D Tetratricopeptide repeat domain 701 772 IPR011990 GO:0005515
Vvi4g442 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Vvi4g442 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 743 777 IPR002885 -
Vvi4g442 837 Gene3D Tetratricopeptide repeat domain 409 512 IPR011990 GO:0005515
Vvi4g442 837 Gene3D Tetratricopeptide repeat domain 299 408 IPR011990 GO:0005515
Vvi4g442 837 Gene3D Tetratricopeptide repeat domain 44 203 IPR011990 GO:0005515
Vvi4g442 837 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 43 830 - -
Vvi4g442 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 708 742 IPR002885 -
Vvi4g442 837 Pfam PPR repeat family 226 267 IPR002885 -
Vvi4g442 837 Pfam PPR repeat family 324 372 IPR002885 -
Vvi4g442 837 Pfam PPR repeat family 602 651 IPR002885 -
Vvi4g442 837 Pfam PPR repeat family 462 508 IPR002885 -
Vvi4g442 837 Pfam PPR repeat family 777 823 IPR002885 -
Vvi4g442 837 Pfam PPR repeat family 711 756 IPR002885 -
Vvi4g442 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 638 672 IPR002885 -
Vvi4g442 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 603 637 IPR002885 -
Vvi4g442 837 Gene3D Tetratricopeptide repeat domain 513 629 IPR011990 GO:0005515
Vvi4g442 837 MobiDBLite consensus disorder prediction 26 52 - -
Vvi4g442 837 SUPERFAMILY HCP-like 409 636 - -
Vvi4g442 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Vvi4g442 837 SUPERFAMILY HCP-like 642 810 - -
Vvi4g442 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 673 707 IPR002885 -
Vvi4g442 837 TIGRFAM PPR: pentatricopeptide repeat domain 189 219 IPR002885 -
Vvi4g442 837 TIGRFAM PPR: pentatricopeptide repeat domain 500 533 IPR002885 -
Vvi4g442 837 TIGRFAM PPR: pentatricopeptide repeat domain 675 708 IPR002885 -
Vvi4g442 837 TIGRFAM PPR: pentatricopeptide repeat domain 430 464 IPR002885 -
Vvi4g442 837 TIGRFAM PPR: pentatricopeptide repeat domain 258 290 IPR002885 -
Vvi4g442 837 TIGRFAM PPR: pentatricopeptide repeat domain 641 673 IPR002885 -
Vvi4g442 837 TIGRFAM PPR: pentatricopeptide repeat domain 711 744 IPR002885 -
Vvi4g442 837 TIGRFAM PPR: pentatricopeptide repeat domain 361 394 IPR002885 -
Vvi4g442 837 TIGRFAM PPR: pentatricopeptide repeat domain 571 604 IPR002885 -
Vvi4g442 837 TIGRFAM PPR: pentatricopeptide repeat domain 222 255 IPR002885 -
Vvi4g442 837 TIGRFAM PPR: pentatricopeptide repeat domain 465 499 IPR002885 -
Vvi4g442 837 TIGRFAM PPR: pentatricopeptide repeat domain 329 359 IPR002885 -
Vvi4g442 837 TIGRFAM PPR: pentatricopeptide repeat domain 152 184 IPR002885 -
Vvi4g442 837 TIGRFAM PPR: pentatricopeptide repeat domain 292 321 IPR002885 -
Vvi4g442 837 TIGRFAM PPR: pentatricopeptide repeat domain 605 639 IPR002885 -
Vvi4g442 837 TIGRFAM PPR: pentatricopeptide repeat domain 781 813 IPR002885 -
Vvi4g442 837 TIGRFAM PPR: pentatricopeptide repeat domain 535 569 IPR002885 -
Vvi4g442 837 TIGRFAM PPR: pentatricopeptide repeat domain 745 778 IPR002885 -
Vvi4g442 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g442 - - K15336 vvi:100259391 1634.77
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g442 . . Bda01g00732 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1808 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005083 1 7 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 5 1 1 41