Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g443 ATGGAGAAGGGTTTGTGCAATCCCCAAGGTGAGGATCCATGGCGAGTCCTCGAATTCTACAGTGGCATCGGCGGAATGAGATACTCTTTAAAGAGGGGAGGTGTGAATGCGAAAATTGTCGAAGCATTCGACATCAACAACATTGCCAACGATGTTTATCAACACAATTTCGGTCACCGCCCTTGCCAGGGTAACATCCAGAGCCTTACTGCTGCTGATCTTGATAGATATAGAGCTCATGCATGGCTTCTTTCTCCTCCTTGCCAGCCATACACCCGACAAGGTCTCCAAAAGCACTCTGGCGATGCCCGGGCATTTTCTTTTCTCAAGATTCTTGAACTTATACAGCACACCTTACATCCTCCACTTATGCTTTTTGTTGAGAATGTTGTTGGATTCGAGACATCTGATACACATGAGAAAATGATTGAGATATTATCAAAAACTGGTTTTGTTACCCAGGAATTTATTTTGAGCCCAATACAATTTGGCGTGCCATATTCCAGGCCACGATACTTTTGCCTGGCAAAAAGGAAACCTTTATCATTTGAAAACCAACTCTTCAATAACCAACTACTTTCAACTCCAAGCCCATTATTTGGTCATGAGGATGACTCACTGATTGATGAACATGATCAATCAGAGAAGATCTGGGATAAGTTGCTCCAATCATGTGAGCCAGTGGAGAGATTTCTTGAATTCAAGAATACTATCAACCCATTAGAAACAGATAATTCTTGGGACCAGTTTTCTGTTCCATTGAGCTTGATAGAGAGGTGGGGAAGTGCTATGGATATTGTCTATCCTGACTCAAAGCGTTGCTGCTGTTTTACAAAAAGTTATTATCGGTATGTGAAGGGTACTGGCTCTCTTTTGGCAACTGGCCAGTCAAAGAAGGATAAAGCATCCTTGTTGGAGGAGCAGTGTCTTAGATATTTTACCCCTAGAGAGGTTGCTAATCTGCATTCTTTCCCAGAGGATTTTCACTTTCCACAGCATGTAAACCTTAGACAGCGATACGCATTGCTGGGGAACAGTTTAAGCGTAGCAGTGGTTGCTCCATTACTTACATATCTATTCACTCAACCTTCAGGATTGTAG 1101 42.6 MEKGLCNPQGEDPWRVLEFYSGIGGMRYSLKRGGVNAKIVEAFDINNIANDVYQHNFGHRPCQGNIQSLTAADLDRYRAHAWLLSPPCQPYTRQGLQKHSGDARAFSFLKILELIQHTLHPPLMLFVENVVGFETSDTHEKMIEILSKTGFVTQEFILSPIQFGVPYSRPRYFCLAKRKPLSFENQLFNNQLLSTPSPLFGHEDDSLIDEHDQSEKIWDKLLQSCEPVERFLEFKNTINPLETDNSWDQFSVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATGQSKKDKASLLEEQCLRYFTPREVANLHSFPEDFHFPQHVNLRQRYALLGNSLSVAVVAPLLTYLFTQPSGL* 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4545233 4550231 - Vvi4g443 Vvi4g443 785222

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g443 366 ProSiteProfiles C-5 cytosine-specific DNA methylase (Dnmt) domain profile. 14 366 IPR001525 GO:0008168
Vvi4g443 366 TIGRFAM dcm: DNA (cytosine-5-)-methyltransferase 17 353 IPR001525 GO:0008168
Vvi4g443 366 CDD Cyt_C5_DNA_methylase 14 360 - -
Vvi4g443 366 Gene3D Vaccinia Virus protein VP39 16 358 IPR029063 -
Vvi4g443 366 PRINTS Cytosine-specific DNA methyltransferase signature 15 31 IPR001525 GO:0008168
Vvi4g443 366 PRINTS Cytosine-specific DNA methyltransferase signature 121 135 IPR001525 GO:0008168
Vvi4g443 366 PRINTS Cytosine-specific DNA methyltransferase signature 164 177 IPR001525 GO:0008168
Vvi4g443 366 PANTHER TRNA (CYTOSINE(38)-C(5))-METHYLTRANSFERASE 12 363 - -
Vvi4g443 366 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 13 359 IPR029063 -
Vvi4g443 366 Pfam C-5 cytosine-specific DNA methylase 15 356 IPR001525 GO:0008168
Vvi4g443 366 Gene3D DNA Methylase, subunit A, domain 2 189 347 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g443 K15336 TRDMT1, DNMT2; tRNA (cytosine38-C5)-methyltransferase [EC:2.1.1.204] - vvi:109121395 744.191
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g443 Blo01g01376 . Bda01g00733 . . Bpe02g00573 . . Cmo05g00414 Cmo12g00274 . Cma05g00403 . Car12g00304 Sed03g1593 Cpe07g00283 . Bhi04g01000 Tan02g2700 Cmetu03g2157 . Hepe10g0271 . Lcy13g1761 . . . . . . . Cone4ag1807 Cone7ag1715 . . . . . Cme03g01643 . . . . . . . . . . . . . . Car05g00337 Cpe11g00343 . . . . . . . . Cla08g01311 Cam08g1771 Cec08g1352 Cco08g1473 Clacu08g1467 . Cre08g1254 Lsi08g01175 . Chy03g01145 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008501 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35