Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g444 ATGTCCGCAAAGAGAGCTACGCTTCTTACAATCAACTCTCTCACTGCTTTATCCAAGGTATGTCCTTCTCCCAACTCCTCCTCGGCTTCATCTAAAACCCTAACTTTATTGAAGAATCTTAGTACTGCCGCTGAAAGAGCCGATTTTCAAATTTCTAACGGGTTTCAAAAAGAAAATTCTCCAGAGAATCACCAAAACCCTGATGGGTTTGACGCAGACAATCAGAATCATATAGAGTTTCAGCAAAAACCAAATGGGCAAAGCCCGGGTGGGTATTTTTCCGGAAGCCCACAAGGGTTTTATGGAGGCAACTCTGTGGAGGCTCAACAAAGCATAAACCCTAATGGGGGTTTTGAGGAAAACCTTAGAAATGAATTTCACAGGAACCCTATTGGGCAAAATGTGAATTTTAATGGGTATAATGGACAAAATTTCCGGGATTTGCAGCAAAATCCAGATGGGCTTTATGGAGGAAACTCCATGAACTCTTCCGAAGTTCATCAAGACTTAAATCCTAGAGGTTACAGGGAATATGCTAGAAACGAGTTTAAGCAGAACCCATTTAGCCAGAGTGGAAATTTTAGTAGGAATTATAGGCAAGGTTCTGGAGGCTTGCCGGCAAATCAGAACGAGCTTTGTAGGGAAAGCACTATAAATGAATATCAGCAGAACCTAGTTGGGCAAAGTGGAAATATTAATGGGTATTGTGGGCAAAATTATGGAGAATCATTGCAAAAGTCGAATGACTTTTATGGACAAAACAGAAATGTACAGAACTCATATTACAGTGAGGGACGAGCAGAAGTGAATCAGAATCGGAATGGGAATTGTCAACAGATCATATCGGAGACTCTGGGAGACCTAAATAGGACTTATGGAGAAAATATCAGGCAATTTCAGCAGAGCCCAAGTGGATATCATAGAGAAAATCTACAGCAGTATCAGCCAAGTGAGAATATCATGGTGGGTTCTCCAAAATCAAGTAATTACAAACCAGATGGAGAGTCTTTAGAAGCTGCAGAGAGTAGCCAATATAGTGGCACTCTTGAGGAGGTGGATGATTTCTGCAAGGATGGAAAAGTAAAGGAAGCTATAGAAGTTTTGGGATTGTTGGAGAAGCAGCACACTCCTGTGGATTTGCCCAGGTACCTGCGGTTAATGAAGGCATGTGGGGAGGCTAAAGCACTACAAGAAGCAAAAGCTGTTCACGAGAGCCTTATCAAATCAGTATCCCCTCTCAAAGTGAGTACTTATAACAGGATCCTAGAGATGTATTCAAAATGTGGTTCCATGGATGATGCATATGCAGTGTTTAAGAAAATGCCAGAGCGCAATTTGACATCCTGGGACACCATGATAACATGGTTTGCTAAGAATGATCTTGGAGAGGAGGCAATTGATCTCAAGGATTATGGCATTGTTCCATCAATGAAGCATTATGCGAGTATGGTGGACATGCTGGGTAATTCAGGGTACTTGGATGAAGCACTAGAGTTCGTTGAGAAGATGCCGCTAGAGCCAAGTGTCGATGTCTGGGAAACCTTGATGAATATATGTAGAGTTCAAGGGAATATGGAAATTGGGGATCGCTGTGCTGAGCTTGTTGAGCATCTGGAGCCCTCCCGCTTAACTGAGCAATCAAAAGTTAGGAGCAGGGTCCATGAATATCGAGCGGGGGATACATCTCATCCTGAGAATGACAAGATCTACGCAAAACTAAGGGGATTGAAGGCACAAATGAAAGAGGCTGGTTATGTGCCAGAGACCAGATTTGTGTTGCATGACATAGACCAAGAAGGCAAGGAGGAAGCTCTTCTTGCTCATAGTGAGAGACTTGCTGTTGCTTACGGCCTTCTCAGCAGCCCAGCGCGTTCACCTATTAGGGTAATCAAGAATCTTCGTGTTTGTGGTGACTGTCACACTGCCCTGAAGATCATTTCAAAGCTTGTTGGCAGGGAGCTCATCATACGAGATGCTAAGAGATTCCACCACTTCAAAGATGGATTGTGTTCTTGCCGGGATTATTGGTGA 2031 43.18 MSAKRATLLTINSLTALSKVCPSPNSSSASSKTLTLLKNLSTAAERADFQISNGFQKENSPENHQNPDGFDADNQNHIEFQQKPNGQSPGGYFSGSPQGFYGGNSVEAQQSINPNGGFEENLRNEFHRNPIGQNVNFNGYNGQNFRDLQQNPDGLYGGNSMNSSEVHQDLNPRGYREYARNEFKQNPFSQSGNFSRNYRQGSGGLPANQNELCRESTINEYQQNLVGQSGNINGYCGQNYGESLQKSNDFYGQNRNVQNSYYSEGRAEVNQNRNGNCQQIISETLGDLNRTYGENIRQFQQSPSGYHRENLQQYQPSENIMVGSPKSSNYKPDGESLEAAESSQYSGTLEEVDDFCKDGKVKEAIEVLGLLEKQHTPVDLPRYLRLMKACGEAKALQEAKAVHESLIKSVSPLKVSTYNRILEMYSKCGSMDDAYAVFKKMPERNLTSWDTMITWFAKNDLGEEAIDLKDYGIVPSMKHYASMVDMLGNSGYLDEALEFVEKMPLEPSVDVWETLMNICRVQGNMEIGDRCAELVEHLEPSRLTEQSKVRSRVHEYRAGDTSHPENDKIYAKLRGLKAQMKEAGYVPETRFVLHDIDQEGKEEALLAHSERLAVAYGLLSSPARSPIRVIKNLRVCGDCHTALKIISKLVGRELIIRDAKRFHHFKDGLCSCRDYW* 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4553792 4556216 - Vvi4g444 Vvi4g444 785223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g444 676 Pfam PPR repeat 416 445 IPR002885 -
Vvi4g444 676 Pfam PPR repeat 448 468 IPR002885 -
Vvi4g444 676 Pfam PPR repeat 480 503 IPR002885 -
Vvi4g444 676 SUPERFAMILY TPR-like 339 559 IPR011990 GO:0005515
Vvi4g444 676 MobiDBLite consensus disorder prediction 55 122 - -
Vvi4g444 676 MobiDBLite consensus disorder prediction 316 345 - -
Vvi4g444 676 PANTHER OS01G0737900 PROTEIN 3 468 - -
Vvi4g444 676 PANTHER OS01G0737900 PROTEIN 469 671 - -
Vvi4g444 676 Pfam DYW family of nucleic acid deaminases 584 676 IPR032867 GO:0008270
Vvi4g444 676 Gene3D Tetratricopeptide repeat domain 469 597 IPR011990 GO:0005515
Vvi4g444 676 Gene3D Tetratricopeptide repeat domain 349 468 IPR011990 GO:0005515
Vvi4g444 676 PANTHER OS07G0578800 PROTEIN-RELATED 469 671 IPR045215 GO:0003723|GO:0009451
Vvi4g444 676 PANTHER OS07G0578800 PROTEIN-RELATED 3 468 IPR045215 GO:0003723|GO:0009451
Vvi4g444 676 MobiDBLite consensus disorder prediction 55 118 - -
Vvi4g444 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Vvi4g444 676 MobiDBLite consensus disorder prediction 316 331 - -
Vvi4g444 676 TIGRFAM PPR: pentatricopeptide repeat domain 417 446 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g444 - - - vvi:100254270 1166.37
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g444 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009940 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 1 0 1 1 1 25