Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g445 ATGGCTGATACTTCTTTTCCTCCCAACTTACTGCCCGACGAGGCGAGCCCTGAATGGATGAACAAAGGCGACAATGCCTGGCAACTCACTGCCGCCACTCTCGTCGGTCTCCAGACTGTTCCGGGGCTGATCATCCTTTATGGAGGTGCAGTGAAGAAGAAATGGGCTGTGAATTCAGCTTTCATGGCGTTCTACGCCTTCGCCTGTGTCCTTATCTGCTGGGTGGGGTGGGGATATAGAATGTCGTTTGGGACGAAGCTTGTTCCATTTTGGGGGAGGGCTAATGTTGCCTTGGACCAAGTTTATCTCCTGGACCCGGCCTTTATTGGGAAGTTCCCACAGGCGACGATGGTGTTTTTTCAATTCGTTTTTGCAGCGATCACTGTGGTTTTGATTGCGGGAGCCTTGTTGGGGCGGATGAATTTTTACGCGTGGATGTTGTTTGTGCCCTTGTGGCTGACGTTTTCGTACACCTTTGTAGCATTTAGTATATGGTGTCCATCAGGTTTTCTCGCTAAGGCTGGGATTATAGACTACTCTGGTGGATATGTGATCCATTTGTCTTCTGGGGTTGCTGGCTTCACTGCAGCATATTGGGTTGGTCCTCGGCTAACCAAGGACAGAGAAAGGTTCCCTCCTAACAACATCCTTCTTATGATGGCTGGGGCAGGATTGCTGTGGATGGGTTGGACAGGGTTCAATGGTGGGGATCCTTATGTAGTGAGTGTCGATGCTTCGTTGGCCGTTTTGAACACGCATGTGTGCACTGCCACTAGCCTGCTCACATGGCTAATCCTCGACATTGCGGTCTTTGGAAAAGCTTCTATAATTGGTGCAGTGCAAGGCATGATCACTGGCTTGGTTTGCATCACACCTGCAGCTGGGGTTGTACAAGGATGGGCAGCCATAATCATGGGGATTTTCTCAGGCTCCATTCCCTGGTTCACCATGATGGTTGTCCACAAAAAATCTGAGCTCCTTCAGAAAGTGGACGACACAATGGCTGTTCTGCATACTCACGCCATTGCTGGAAGCCTCGGAGGAATCCTGACCGGTCTATTTGCTTCCCCAAAGCTTAACCGTTTGTTCTATGGCTACGGAGGATTCAGGCAAATTGGAATTCAGCTTCTGGGGATTGTGTTTGTGCTTGTGTTTAACGTCATAGCCACAAGCCTAATATGTCTTGTGGTGCAACTCATCGTGCCCCTGAGAATGTCTGATGAAGATATGGAGATTGGGGATGAAGCAGCTCATGGGGAGGAGGCCTATGCTATCTGGGGTCAAGGTGACAAGCTTGAGAACTCAAGGTATGGGAGTTCAGTCTACGGTGATGTTGAATTGCCTATGCCCAAGCCCAGGGGAGCTGGCCAAGGTTGGGGAAGGTTGGCTACCAAGTACCAAGCATGGGATAATGTCCCAACTAAGGGCCATCAAGGCCAGAGTCTTGGTGGCTGGTGA 1458 50.27 MADTSFPPNLLPDEASPEWMNKGDNAWQLTAATLVGLQTVPGLIILYGGAVKKKWAVNSAFMAFYAFACVLICWVGWGYRMSFGTKLVPFWGRANVALDQVYLLDPAFIGKFPQATMVFFQFVFAAITVVLIAGALLGRMNFYAWMLFVPLWLTFSYTFVAFSIWCPSGFLAKAGIIDYSGGYVIHLSSGVAGFTAAYWVGPRLTKDRERFPPNNILLMMAGAGLLWMGWTGFNGGDPYVVSVDASLAVLNTHVCTATSLLTWLILDIAVFGKASIIGAVQGMITGLVCITPAAGVVQGWAAIIMGIFSGSIPWFTMMVVHKKSELLQKVDDTMAVLHTHAIAGSLGGILTGLFASPKLNRLFYGYGGFRQIGIQLLGIVFVLVFNVIATSLICLVVQLIVPLRMSDEDMEIGDEAAHGEEAYAIWGQGDKLENSRYGSSVYGDVELPMPKPRGAGQGWGRLATKYQAWDNVPTKGHQGQSLGGW* 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4560586 4563264 + Vvi4g445 Vvi4g445 785224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g445 485 PANTHER AMMONIUM TRANSPORTER 4 454 - -
Vvi4g445 485 PRINTS Rhesus blood group protein signature 121 137 IPR002229 GO:0005887
Vvi4g445 485 PRINTS Rhesus blood group protein signature 217 235 IPR002229 GO:0005887
Vvi4g445 485 PRINTS Rhesus blood group protein signature 248 270 IPR002229 GO:0005887
Vvi4g445 485 PANTHER AMMONIUM TRANSPORTER MEP2 4 454 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vvi4g445 485 Pfam Ammonium Transporter Family 26 423 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vvi4g445 485 SUPERFAMILY Ammonium transporter 19 405 - -
Vvi4g445 485 TIGRFAM amt: ammonium transporter 24 423 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vvi4g445 485 Gene3D Ammonium transporter AmtB like domains 11 427 IPR029020 -
Vvi4g445 485 ProSitePatterns Ammonium transporters signature. 178 203 IPR018047 GO:0008519|GO:0016020|GO:0072488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g445 K03320 - vvi:100249173 917.146