Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g448 ATGGAGGTGTTCATACGCACACGTGCAAACCAAATCCCCACACGTGTGACCCAAAACCCAGTGCATGTTAAAACCGTGAAATCTCGGACCCATGAGTCACGTGTGTTAATACAGAGCGAGACCAACAAAACATTTTCCCTTCCGGAGAAACGAAGAGCAAAAATGTGGAGAAGATTGGTATCATCATCGACGTCAGCTTCCCTTAAAACCCTAGCATCGTCATCGCGCCGATCCTCACTGCCGACACTGGTCCGACCACTCACCTCTGTCTCTTCATCTTCTCCTTCTAATACGACTACTTTTCCTTCCCACAGTCCTATCTCCTCCCCTTCCGATTTTCTCTCAAAGGGGGGAAAGAAGGTTGAAAATGTTATACCCATTGCAACCGGACATGAACGCGAGGAGCTTGAGGGAAGGACACTTCTTGAAGCGAATTATCCAATTGGTCCATTTGGCACTAAGGAAGCACCTGCTATTGTTAAGTCTTTCTACGACAGAAGAATAGTGGGCTGCCCAGGTGGTGAGGGAGAAGATGAGCATGATGTAGTGTGGTTTTGGTTGCACAAAGACCAACCACATGTCTGCCCAGTCTGTTCTCAACATTTCAAGTTGGAAGTAGTTGGCCCTGGTGGATCTCCTTATCACTACTAG 651 47.62 MEVFIRTRANQIPTRVTQNPVHVKTVKSRTHESRVLIQSETNKTFSLPEKRRAKMWRRLVSSSTSASLKTLASSSRRSSLPTLVRPLTSVSSSSPSNTTTFPSHSPISSPSDFLSKGGKKVENVIPIATGHEREELEGRTLLEANYPIGPFGTKEAPAIVKSFYDRRIVGCPGGEGEDEHDVVWFWLHKDQPHVCPVCSQHFKLEVVGPGGSPYHY* 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4580990 4585068 + Vvi4g448 Vvi4g448 785227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g448 216 SUPERFAMILY Rubredoxin-like 119 210 - -
Vvi4g448 216 ProSiteProfiles Cytochrome c oxidase subunit Vb, zinc binding domain profile. 104 211 IPR002124 GO:0005740|GO:0005751|GO:0006123
Vvi4g448 216 CDD Cyt_c_Oxidase_Vb 116 209 IPR002124 GO:0005740|GO:0005751|GO:0006123
Vvi4g448 216 Pfam Cytochrome c oxidase subunit Vb 124 210 IPR002124 GO:0005740|GO:0005751|GO:0006123
Vvi4g448 216 Gene3D Cytochrome c oxidase, subunit Vb 118 207 IPR036972 GO:0005740|GO:0005751|GO:0006123
Vvi4g448 216 PANTHER CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL 55 214 IPR002124 GO:0005740|GO:0005751|GO:0006123
Vvi4g448 216 MobiDBLite consensus disorder prediction 82 112 - -
Vvi4g448 216 MobiDBLite consensus disorder prediction 82 117 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g448 K02265 COX5B; cytochrome c oxidase subunit 5b - vvi:100244002 374.785
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g448 Vvi9g481 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g448 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002029 2 2 2 2 2 2 3 2 2 2 2 2 2 1 2 3 2 4 3 2 2 2 2 2 2 1 2 4 3 2 66