Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g45 ATGTTTACGCGTTTGTTCGGGAAACCTAAGCAGGAGGCCAATGCCCTAACAACATTGGACAAGTTAAACGAGACACTTGAAATGCTAGAGAAAAAAGAAGGTGTCCTTTTGAAGAAGGCCGCTGCAGAGGTTGAAAAGGCTAAGGAATTTACTAGAGCAAAGAACAAAAGGGCGGCAATACAATGTTTAAAGAGGAAGAGGCTCTATGAACAGCAAATTGAACAACTTGGAAATTTCCAATTGCGCATTCATGATCAGATGATATTGCTAGAAGGTGCCAAAGCTACAACAGAGACTGTTGATGCATTGAGGACTGGAGCTTCTGCGATGAAGGCAATGCAAAAGGCGACGAATATTGATGATGTTGACAAAACAATGGATGAGATTAATGAGCAGACAGAGAACATGAAACAGATTCAGGAGGCATTAGCCACACCCATTGGTGCAGCAGCTGATTTTGATGAAGATGAATTGGAAGCAGAGCTTGAAGAATTAGAAGGAGCTGAATTGGAGGAACAGCTTCTCCAGCCTGCCACAACTGCCCCAGCAGCACCAATCCCTGCAGGCAGAGTACCAGCCCGCCCAGCTCCTCAGAGGAACACTGCTGAGGATGATGAGCTTGCTGCATTACAGGCAGAGATGGCACTTTAA 651 45.31 MFTRLFGKPKQEANALTTLDKLNETLEMLEKKEGVLLKKAAAEVEKAKEFTRAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMILLEGAKATTETVDALRTGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALATPIGAAADFDEDELEAELEELEGAELEEQLLQPATTAPAAPIPAGRVPARPAPQRNTAEDDELAALQAEMAL* 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 557910 563227 - Vvi4g45 Vvi4g45 784824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g45 216 MobiDBLite consensus disorder prediction 175 216 - -
Vvi4g45 216 Gene3D - 13 91 - -
Vvi4g45 216 PANTHER SNF7 FAMILY-RELATED 1 216 - -
Vvi4g45 216 Gene3D - 117 172 - -
Vvi4g45 216 Coils Coil 122 142 - -
Vvi4g45 216 Coils Coil 12 39 - -
Vvi4g45 216 Coils Coil 151 175 - -
Vvi4g45 216 Pfam Snf7 20 185 IPR005024 GO:0007034
Vvi4g45 216 PANTHER CHARGED MULTIVESICULAR BODY PROTEIN 1 216 IPR005024 GO:0007034
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g45 K12194 CHMP4A_B, SNF7, VPS32A_B; charged multivesicular body protein 4A/B - vvi:100242412 318.931
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g45 Vvi9g222 ECH
Vvi4g45 Vvi11g231 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g45 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001298 2 3 2 3 2 2 4 2 2 2 2 2 4 1 1 4 2 3 5 2 2 3 2 2 2 2 2 4 3 3 75