Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g451 ATGTTTAATAAATTAAGTGGGTGGTTTGATACTACTATGGATTCTCCTGAAACTGCTAAGACCACCACCTCCACAACCAAATCCTCTTCACAATCTCCCCCACTTCAAGTCACTACATTTCCTCCAATTCCCCCTCCTGAAACTGCTGCAACCACCGCCACTTCTTCATCAAAATCTCCTCCAGTTCAAGACTCCCCTTTCTCTACATACGTTAGCAACCTGTCTCCTATAAAACCTGTCAAGGCTGCACACGTTGCACAAGAATTCCCAGGACTTTGTTCTCCTCCTCTTGTGTTTACATCACCACGGATAAATCCGCATCACGAAACAAGTTTTCTAAAAAGGACGCAATGCCATCATGTACAGTTTTCAACAGACAATGGGAGAGGCAAGAAAGTGGCCGCTGTTTCAAATATTTCTGATAATGCAAATGCCCAATTGAACACTGGGTTGGTAGCTAAAGTTGAGAAGGAATGTGATATTAAGGACTCTGTGCAAGACCAACCCTGCAGCTCCTCTGGGTGTGTTGATGAATACTTGGCTGATACCATGGAGGCAGACTCTGCAATTTCTGCACATTCAGCTGGTTCTTGTTTGAATCAATCTAATGATGCACTTCAATCATTACAAAGTGGTTTTACAGACTCAAACAATACCACCGCAAGATTTTTTGACAAAAAAAATATCAGTGTAGATAAAAAGAGGGAACTGGATGCATCTCCAGCTTTGTTAGAGCAAGCTGAAGATGAACTTCAAGGAAAGTCAGCATTCAATGTTAAGCCAGTGCCAACTGATGGAAAGCAAAGAGGTGGTGAAAGGACATCTACAGAAGTCCTAAATGTAGAATCTAATTTGTCTGTGGACTATGCTTCTGAACAGTTATATGAAAGTTCAGTGGCTCAGTTTCTGTTTGTTAAACTCTGTTATAATATATCACAAGATGTTAAATTGCAGACTGCAGGAGGCAATCAGGATGAACTGGATTGCACTCCCCATTTGATGCCCGAAGCATTGCAGATTGTACGGATGGATGAAAATTGTGCTCAGCAAGCAGGAGAAATCTCAAATGGGCCTGTTGAGAACACAGTGCTGCATGATCCTGAGGCCAGTCAGCAGACTCAGCACCAACGTGGCATGCTTAGACGGTGCCTTCAATTTGGAGAGGCTCAATTGAATATTATCACAAACAACCCTAGTTTTTCATATCCAACAAGTATTGCAGCCAATTCAAGATTACTTGCTACTCCTAGTGATTCAGAGCTTCCAGAATCCTCATGTGTGGATTTAACTACAACTTCCAGCAACAAGCAATTGGCTTACTCACAACCAGTAACTGCCATGCTTCCTCCTCAAAACAGTGGAAACTCGTCCCTAGCAGGTTCCAAGCCATCTGGTATTGGCCTGCACTTAAATAGCATTGTCAATGCTGTGCCCATGGGTTTCAGTTCTACTACAAGCCTGAAAGTAGAAGAGAAAGATTATTCGAGTGCATGGAGAATAAGTGACTCAATTCCGTCAAATGTAATAGAGAATTCAGCTGGTACTGAAGATAGGAGAAACGAAAATAAGGCTTCAATTGCAATGAGTTCTGCTACTTCTCAGTCTTCCCATGGAATTCAACCAACCAAGCCCAAAAAAGAGAAGGCAAGCTTAAGCTTCCATGTTATTTCTCACAATTTTGACTTTTCAGCATCAAGCACCAATGATGGAGACGGTTGCAAACGTTGCAATTGTAAGAAGTCCAAATGCTTGAAACTGTATTGTGATTGTTTTGCTGCCGGAATCTATTGCGCTGAAGGTTGTGCTTGCGTAGGATGCTTCAACAGAGCTGAATATGATGATAGAGTTCTTGAGACACGGAAACAAATTGAATCTCGAAATCCTCTCGCATTTGCTCCAAAGATTGTCCCACCCGTCAATGGGTCTCCAATAAATAGTGGGGAAGATGGAAGGTCAACACCATCATCAGCGAGGCACAAGAGAGGTTGCAATTGCAAGAAGTCAATGTGTTTGAAAAAATACTGCGAGTGCTATCAGGCTAATGTTGGATGTTCTGCTGGATGCCGTTGTGAGGGTTGTAAAAATGTCTATGGCAGGAAGGAAGAATATGGTGCATTCAAAGAAATGATGAGCAGAAGAGCCAATGATGATAGATTGGAAAGTTCTTTTGACAAGAAGCTGGAAATGGTTGCAGCAAGGAGTGACTTCTTACGCCCTGAGCTTTGTAATCCACATAACATGACACCCATGACGCCATCATTTCAGTGCTCAGACCATGGAAACGATGCAGCAAATTTTCAAATTCCTTCCAGAAGATATGCTCAATCACCAGAATCTGATTTTTCGATCTTATCGTCTTATGGAAAATCCCCAGTATCTCCAAAGAATTCAGATAGTCACAATATTCTCCCTGAACCAGGAAAAGAAATTTGGGATATGGCTTGTTATGAGCATGAATTTGAGTATGGTAATGCAGAAAAAGTAGATCAATTCACTCCAGGATCCATGAATCCTTCAGCTTCATCCAAAACAAGTGGATTGACAAATGTCTCAAGAGGCCAATTATGTCCTGGAAGTGACCATCTTGTGTCAGGTGGCTCCCTTCGTTGGCGTAGTTCACCAATTCCACCATCAACTCAGTTAGGTGAGACCAAAATTTTCCAGGGACTTGAATCTGACAATGAGCTTTATGACATACTGGAAGATGACACACCCACGATACTGAAAGATGCTTCTACTCCCACCAAGGCAGTAAAAGCAAGCTCCCCTAAGCAGAAACGGGTTTCTCCTCCAAAAATTCAATCGCATGAGCGTGGGTCATCCAGCTCCTTGGCAATCTTGAAAAGTGGCCGGAAGTTCATATTGCAGGCTGTTCCTTCTTTCCCACCTCTCACCCCATGCATTGATACCAAAAGCAGCTCCCATCAAAATTCAAGTGATCCTCAAGATAGTATTATGGATATGGGTGCTAAAATTGCCATTTGCAGAACTCTAAGTTGCGGATTGGAAGATTGTGTCAGGATTCCAAGTGACAACCATTTGCAAGGATTAATGGGCAAAGATGGAAAACGGAATTTAGTCAGACAGCTGCTGCTCCTCATTCATGTTCTCTTTTTCTTACTCTTTTTTTTCCGCATTTTTGAGCATTTCTTTCTTGTTCAATTGCATGTTTCTAGTAATGGCAACATTTCCCAGATGGTCTCCTTCTGCTGGAGGTATGGTAGCTGTTATTCTTTCAGCAGATGCATTGGTTTCTCTCATTTTCTGACAAATATTGAAAAATAA 3285 42.04 MFNKLSGWFDTTMDSPETAKTTTSTTKSSSQSPPLQVTTFPPIPPPETAATTATSSSKSPPVQDSPFSTYVSNLSPIKPVKAAHVAQEFPGLCSPPLVFTSPRINPHHETSFLKRTQCHHVQFSTDNGRGKKVAAVSNISDNANAQLNTGLVAKVEKECDIKDSVQDQPCSSSGCVDEYLADTMEADSAISAHSAGSCLNQSNDALQSLQSGFTDSNNTTARFFDKKNISVDKKRELDASPALLEQAEDELQGKSAFNVKPVPTDGKQRGGERTSTEVLNVESNLSVDYASEQLYESSVAQFLFVKLCYNISQDVKLQTAGGNQDELDCTPHLMPEALQIVRMDENCAQQAGEISNGPVENTVLHDPEASQQTQHQRGMLRRCLQFGEAQLNIITNNPSFSYPTSIAANSRLLATPSDSELPESSCVDLTTTSSNKQLAYSQPVTAMLPPQNSGNSSLAGSKPSGIGLHLNSIVNAVPMGFSSTTSLKVEEKDYSSAWRISDSIPSNVIENSAGTEDRRNENKASIAMSSATSQSSHGIQPTKPKKEKASLSFHVISHNFDFSASSTNDGDGCKRCNCKKSKCLKLYCDCFAAGIYCAEGCACVGCFNRAEYDDRVLETRKQIESRNPLAFAPKIVPPVNGSPINSGEDGRSTPSSARHKRGCNCKKSMCLKKYCECYQANVGCSAGCRCEGCKNVYGRKEEYGAFKEMMSRRANDDRLESSFDKKLEMVAARSDFLRPELCNPHNMTPMTPSFQCSDHGNDAANFQIPSRRYAQSPESDFSILSSYGKSPVSPKNSDSHNILPEPGKEIWDMACYEHEFEYGNAEKVDQFTPGSMNPSASSKTSGLTNVSRGQLCPGSDHLVSGGSLRWRSSPIPPSTQLGETKIFQGLESDNELYDILEDDTPTILKDASTPTKAVKASSPKQKRVSPPKIQSHERGSSSSLAILKSGRKFILQAVPSFPPLTPCIDTKSSSHQNSSDPQDSIMDMGAKIAICRTLSCGLEDCVRIPSDNHLQGLMGKDGKRNLVRQLLLLIHVLFFLLFFFRIFEHFFLVQLHVSSNGNISQMVSFCWRYGSCYSFSRCIGFSHFLTNIEK* 1095
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4595143 4612704 - Vvi4g451 Vvi4g451 785230

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g451 1094 MobiDBLite consensus disorder prediction 1 67 - -
Vvi4g451 1094 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 661 695 IPR005172 -
Vvi4g451 1094 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 574 609 IPR005172 -
Vvi4g451 1094 MobiDBLite consensus disorder prediction 49 67 - -
Vvi4g451 1094 SMART CXC_2 571 612 IPR033467 -
Vvi4g451 1094 SMART CXC_2 658 699 IPR033467 -
Vvi4g451 1094 MobiDBLite consensus disorder prediction 1 36 - -
Vvi4g451 1094 MobiDBLite consensus disorder prediction 524 540 - -
Vvi4g451 1094 ProSiteProfiles CRC domain profile. 572 698 IPR005172 -
Vvi4g451 1094 MobiDBLite consensus disorder prediction 907 941 - -
Vvi4g451 1094 MobiDBLite consensus disorder prediction 508 544 - -
Vvi4g451 1094 MobiDBLite consensus disorder prediction 908 922 - -
Vvi4g451 1094 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 13 976 IPR044522 GO:0003700
Vvi4g451 1094 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 13 976 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g451 K21776 LIN54; protein lin-54 - vvi:100261127 1786.93
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g451 Vvi11g318 ECH
Vvi4g451 Vvi9g483 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g451 . . . . . . . . . . . Cma05g00400 . . . . . . . . . . . . . . . . . . . . . Cone17ag1032 Cone20ag0663 . . . . . . . . . . . . . . . . . . Car05g00334 . . . . . . . . . Cla08g01314 Cam08g1774 Cec08g1356 Cco08g1476 Clacu08g1470 . Cre08g1257 Lsi08g01178 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014749 0 0 0 0 0 1 1 1 1 0 1 1 1 0 0 0 1 2 0 1 0 1 1 1 1 1 1 0 0 1 18
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14752 PF03638 TCR 6.60E-11 No_clan Vvi TF