Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g456 ATGGCGTTGGCTTCGTGGAATCTCACTTCACTGGCGTTCAAGGGTTTATTGTCAGCATCTCACGACCAACGCCTCTTCTCGGCGGCTCAACCCACATCCAATCTAATTCTGCCTCATCACTGTTTATCTCGCTCTGTGCTCGCTTTCTCACGCCGTCGAAAATCCAACTCTCCAGTCCAGTCTTCGAAGAAAAACAAGAAAAGTTCGGCTCATAATAATGCTGAGGAGGATGCTGATTTAGATGAAGATGCTTTTGAGGCACTGTTTAATCAGCTTGAAGAAGATCTCAAGAATGATAGTCCATCCATAGATGACAATGACGAAGAGATAAGCGAAGAAGACCTTGCTAGGCTTGAACGTGAGTTAGAGGAGGCTCTGGGGGATGATGATGAGCTATTAGGAATGTTTAACTCGATTACAGATGAAATAGAAAGTAATAATGATGCCGAAGAGGTAGAGGATGATGAGGATGAAGAAAGACCAGTAAAGCTCAAAAATTGGCAACTTCGAAGATTAGCTTCCGCTCTGAAAACTGGCCGCCGTAAAACTAGTATTAAAAGTCTAGCTGCTGAGCTTTGTCTTGATAGGGCAGTTGTTCTTGAATTGCTTCGTGAACCCCCTCCAAATCTTCTGCTTATGAGTGCTGCTTTACCGGATAAACCTGTGCCAACAATCACAGTGCCTGAAACTGAACCTGTGGAAGCTGTTCCTTTGGACACTACTAGAGGAGCTGTGGAAGCTGCAGAACCTGCAGAACCTGAGGTCAAGGGGAAGGTGCCAGTGCATGTTATGCAAAGCAGATGGTCTGCCCAAAAGAGACTGAAGAAAGTGCAAGTTGAAACCCTTGAAAGAGTTTATAGAAGAACAAAGCGACCTACTAATGCAATGATTAGCAGCATTGTGCACGTGACAAACCTACCCAGAAAAAGAGTTGTGAAATGGTTCGAAGATAAGCGCACTGAAGATGGTGTTCCTGAGCATCGCCTCCCATTCCAACGGTCCACTTCTGAAACTGTCTTTTCCCCTTGA 1029 45.09 MALASWNLTSLAFKGLLSASHDQRLFSAAQPTSNLILPHHCLSRSVLAFSRRRKSNSPVQSSKKNKKSSAHNNAEEDADLDEDAFEALFNQLEEDLKNDSPSIDDNDEEISEEDLARLERELEEALGDDDELLGMFNSITDEIESNNDAEEVEDDEDEERPVKLKNWQLRRLASALKTGRRKTSIKSLAAELCLDRAVVLELLREPPPNLLLMSAALPDKPVPTITVPETEPVEAVPLDTTRGAVEAAEPAEPEVKGKVPVHVMQSRWSAQKRLKKVQVETLERVYRRTKRPTNAMISSIVHVTNLPRKRVVKWFEDKRTEDGVPEHRLPFQRSTSETVFSP* 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4701758 4710455 + Vvi4g456 Vvi4g456 785235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g456 342 MobiDBLite consensus disorder prediction 52 67 - -
Vvi4g456 342 PANTHER ZINC-FINGERS AND HOMEOBOXES RELATED 21 334 - -
Vvi4g456 342 SUPERFAMILY Homeodomain-like 268 328 IPR009057 -
Vvi4g456 342 MobiDBLite consensus disorder prediction 52 80 - -
Vvi4g456 342 Gene3D - 266 326 - -
Vvi4g456 342 MobiDBLite consensus disorder prediction 323 342 - -
Vvi4g456 342 CDD homeodomain 268 319 IPR001356 GO:0003677
Vvi4g456 342 SMART HOX_1 271 329 IPR001356 GO:0003677
Vvi4g456 342 Coils Coil 108 135 - -
Vvi4g456 342 PANTHER HOMEOBOX PROTEIN 8 21 334 - -
Vvi4g456 342 ProSiteProfiles 'Homeobox' domain profile. 265 325 IPR001356 GO:0003677
Vvi4g456 342 Pfam Homeodomain 273 320 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g456 - - - vvi:100254226 521.546
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g456 Blo01g01378 . Bda01g00735 . . Bpe02g00571 . . . . . . Car09g00413 . . . Cpe06g00349 . . . . . . . Cla05g01751 Cam05g1864 Cec05g1876 Cco05g1940 Clacu05g1855 Cmu05g1736 Cre05g1868 Cone4ag1803 Cone7ag1711 . . Lsi04g02145 Csa03g04348 Chy04g00354 . . . . . . . . . . . Cmo09g00477 Cma09g00470 . . . . . Bhi09g02268 . . . . Mch11g0572 . . . . . . . . . . . Cme04g00393
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009857 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 3 1 1 0 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14753 PF00046 Homeodomain 5.00E-07 CL0123 Vvi TF