Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g458 ATGCAGGAACAAGCTACGAGTTCTCTTGCGGCCAGCTCTTTACCTTCTAGTAGCGAGAGATCTTCTAGTTCTGCTCTTCAAGCCGAAGTAAAGGAAGGAATGGAGAGTGACGAGGAGATCAGAAGAGTGCCAGAGATCGGCAGTGGGGACCCGGCGGGCCCATCAGCCTCCGGACGAGAGGCAGCTTTAGTGGCCGGTCCCGACCGGGTTCAGGCCTCAGGCGATGGTCAGAGAAAAAGAGGAAGAAGCCCGGCTGACAAAGAGAACAAGCGGTTAAAGAGGTTGTTGAGGAACAGAGTGTCAGCACAGCAAGCAAGGGAAAGGAAGAAAGCATACTTGAATGAGCTAGAGGTGAGGGTCAAAGACTTGGAGAGGAAGAACTCTGAGCTTGAAGAGAGGCTCTCCACCTTGCAAAATGAGAATCAGATGCTCAGACATATATTGAAGAACACCACAGCAAGCAGGAGAGGAGGAAGTAGTAATAATTCAAACGCAGATGGGTCTTTGTGA 510 50.78 MQEQATSSLAASSLPSSSERSSSSALQAEVKEGMESDEEIRRVPEIGSGDPAGPSASGREAALVAGPDRVQASGDGQRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLNELEVRVKDLERKNSELEERLSTLQNENQMLRHILKNTTASRRGGSSNNSNADGSL* 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4716173 4719590 + Vvi4g458 Vvi4g458 785237

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g458 169 MobiDBLite consensus disorder prediction 1 94 - -
Vvi4g458 169 SMART brlzneu 86 150 IPR004827 GO:0003700|GO:0006355
Vvi4g458 169 Coils Coil 85 147 - -
Vvi4g458 169 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 93 108 IPR004827 GO:0003700|GO:0006355
Vvi4g458 169 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 1 158 IPR044280 GO:0000981|GO:0045944
Vvi4g458 169 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 1 158 - -
Vvi4g458 169 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 88 151 IPR004827 GO:0003700|GO:0006355
Vvi4g458 169 MobiDBLite consensus disorder prediction 149 169 - -
Vvi4g458 169 MobiDBLite consensus disorder prediction 31 45 - -
Vvi4g458 169 Gene3D Single helix bin 109 150 - -
Vvi4g458 169 CDD bZIP_HY5-like 91 142 - -
Vvi4g458 169 MobiDBLite consensus disorder prediction 73 94 - -
Vvi4g458 169 Pfam bZIP transcription factor 87 147 IPR004827 GO:0003700|GO:0006355
Vvi4g458 169 SUPERFAMILY Leucine zipper domain 90 148 IPR046347 GO:0003700|GO:0006355
Vvi4g458 169 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g458 K16241 HY5; transcription factor HY5 - vvi:104879018 252.292
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g458 . . Bda01g00765 . Bpe02g01240 . . . Cmo05g00389 Cmo12g00279 Cma01g01495 Cma05g00390 . Car12g00311 Sed07g1964 Cpe07g00288 . Bhi04g00047 Tan02g2761 Cmetu03g1346 . Hepe10g0217 . Lcy13g1832 Cla05g01750 Cam05g1863 Cec05g1875 Cco05g1939 Clacu05g1854 Cmu05g1735 Cre05g1867 Cone4ag1802 . Cone17ag1030 . Lsi04g02144 Csa03g04347 Chy04g00355 Cme03g01624 Blo17g00025 Blo18g00033 Bda01g00995 Bda13g01268 Bpe14g00575 . Bma01g01283 Bma02g00029 . Cmo01g01551 . . Cma12g00329 . Car05g00331 Cpe11g00334 Cpe02g00460 . . . . . . . Cla08g01323 Cam08g1785 Cec08g1363 Cco08g1490 Clacu08g1479 . Cre08g1268 Lsi08g01193 . Chy03g01131 Cme04g00394
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi4g231 . 194 420 bZIP Transcription Factor Family AT5G24800 55.8 1.8e-54 209.9
Vvi13g824 . 1 196 bZIP Transcription Factor Family AT2G41070 57.5 1.9e-44 176.4
Vvi2g737 . 1 350 bZIP Transcription Factor Family AT2G35530 66.8 5.8e-110 394.8
Vvi13g162 ECH 9 199 bZIP Transcription Factor Family AT2G40620 58.0 4.3e-56 215.7
Vvi6g765 ECH 1 220 bZIP Transcription Factor Family AT2G40620 57.6 1.1e-54 211.1
Vvi18g1279 . 1 145 bZIP Transcription Factor Family AT2G40620 66.2 1.0e-41 167.9
Vvi3g57 ECH 184 334 bZIP Transcription Factor Family AT2G40620 62.3 1.1e-38 157.9
Vvi13g978 . 138 470 bZIP Transcription Factor Family AT5G06950 79.3 4.5e-137 484.6
Vvi8g1158 . 119 452 bZIP Transcription Factor Family AT5G06950 78.9 5.8e-137 484.2
Vvi1g279 . 121 454 bZIP Transcription Factor Family AT5G06950 74.2 9.3e-127 450.3
Vvi8g1240 . 135 430 bZIP Transcription Factor Family AT5G06950 61.4 2.7e-94 342.4
Vvi6g1220 . 188 472 bZIP Transcription Factor Family AT5G06950 61.4 8.0e-94 340.9
Vvi7g1127 ECH 52 347 bZIP Transcription Factor Family AT5G06950 58.3 1.5e-87 320.1
Vvi18g346 ECH 77 359 bZIP Transcription Factor Family AT5G06950 60.2 2.7e-86 315.8
Vvi6g1220 . 141 501 bZIP Transcription Factor Family AT1G08320 73.0 8.8e-139 490.3
Vvi8g1240 . 116 430 bZIP Transcription Factor Family AT1G08320 60.6 1.2e-98 357.1
Vvi13g978 . 182 469 bZIP Transcription Factor Family AT1G08320 63.5 4.4e-98 355.1
Vvi8g1158 . 164 451 bZIP Transcription Factor Family AT1G08320 63.5 5.8e-98 354.8
Vvi1g279 . 159 453 bZIP Transcription Factor Family AT1G08320 60.0 8.6e-94 340.9
Vvi18g346 ECH 77 359 bZIP Transcription Factor Family AT1G08320 56.7 2.4e-83 306.2
Vvi7g1127 ECH 65 347 bZIP Transcription Factor Family AT1G08320 56.2 6.9e-83 304.7
Vvi13g978 . 158 470 bZIP Transcription Factor Family AT5G06960 78.0 2.2e-125 445.7
Vvi8g1158 . 139 452 bZIP Transcription Factor Family AT5G06960 77.1 6.3e-125 444.1
Vvi1g279 . 147 454 bZIP Transcription Factor Family AT5G06960 71.8 4.2e-113 404.8
Vvi6g1220 . 179 472 bZIP Transcription Factor Family AT5G06960 59.0 3.8e-90 328.6
Vvi8g1240 . 116 430 bZIP Transcription Factor Family AT5G06960 58.7 8.6e-90 327.4
Vvi18g346 ECH 59 359 bZIP Transcription Factor Family AT5G06960 58.1 4.9e-85 311.6
Vvi7g1127 ECH 43 347 bZIP Transcription Factor Family AT5G06960 56.3 1.9e-84 309.7
Vvi8g484 . 217 678 bZIP Transcription Factor Family AT3G10800 50.5 4.0e-100 362.8
Vvi3g57 ECH 1 345 bZIP Transcription Factor Family AT4G38900 62.0 8.0e-99 358.2
Vvi13g162 ECH 13 127 bZIP Transcription Factor Family AT4G38900 79.1 1.6e-38 157.9
Vvi18g1279 . 20 132 bZIP Transcription Factor Family AT4G38900 76.1 1.5e-36 151.4
Vvi6g765 ECH 2 116 bZIP Transcription Factor Family AT4G38900 75.7 3.3e-36 150.2
Vvi3g57 ECH 4 344 bZIP Transcription Factor Family AT2G21230 60.1 4.0e-92 335.9
Vvi19g147 ECH 1 231 bZIP Transcription Factor Family AT2G42380 55.5 5.8e-58 221.5
Vvi12g210 ECH 1 230 bZIP Transcription Factor Family AT2G42380 55.5 1.7e-57 219.9
Vvi4g930 ECH 1 349 bZIP Transcription Factor Family AT4G36730 53.9 1.1e-63 240.7
Vvi13g978 . 138 470 bZIP Transcription Factor Family AT3G12250 79.0 4.9e-136 481.1
Vvi8g1158 . 119 452 bZIP Transcription Factor Family AT3G12250 78.4 7.1e-135 477.2
Vvi1g279 . 121 454 bZIP Transcription Factor Family AT3G12250 73.1 2.3e-125 445.7
Vvi6g1220 . 188 472 bZIP Transcription Factor Family AT3G12250 62.5 1.4e-93 340.1
Vvi8g1240 . 117 430 bZIP Transcription Factor Family AT3G12250 58.2 4.0e-93 338.6
Vvi7g1127 ECH 43 347 bZIP Transcription Factor Family AT3G12250 55.9 1.0e-85 313.9
Vvi18g346 ECH 72 359 bZIP Transcription Factor Family AT3G12250 58.5 2.6e-84 309.3
Vvi1g279 . 3 454 bZIP Transcription Factor Family AT1G68640 62.7 2.3e-144 509.2
Vvi8g1158 . 55 452 bZIP Transcription Factor Family AT1G68640 60.6 2.7e-124 442.6
Vvi13g978 . 56 470 bZIP Transcription Factor Family AT1G68640 59.6 2.8e-121 432.6
Vvi8g1240 . 123 430 bZIP Transcription Factor Family AT1G68640 56.8 1.8e-88 323.6
Vvi6g1220 . 186 472 bZIP Transcription Factor Family AT1G68640 59.3 1.2e-87 320.9
Vvi7g1127 ECH 56 347 bZIP Transcription Factor Family AT1G68640 54.8 7.3e-82 301.6
Vvi18g346 ECH 77 359 bZIP Transcription Factor Family AT1G68640 55.3 1.8e-80 297.0
Vvi18g1279 . 1 194 bZIP Transcription Factor Family AT1G43700 63.1 5.4e-53 205.3
Vvi3g57 ECH 132 307 bZIP Transcription Factor Family AT1G43700 55.4 2.4e-37 153.3
Vvi15g772 ECH 1 431 bZIP Transcription Factor Family AT2G46270 52.3 1.9e-88 323.2
Vvi4g458 . 1 147 bZIP Transcription Factor Family AT5G11260 71.6 5.1e-42 167.9
Vvi5g1269 . 1 290 bZIP Transcription Factor Family AT2G31370 70.2 2.1e-96 349.7
Vvi18g1279 . 19 168 bZIP Transcription Factor Family AT2G31370 67.1 9.4e-41 164.9
Vvi13g162 ECH 12 135 bZIP Transcription Factor Family AT2G31370 73.4 1.0e-39 161.4
Vvi6g765 ECH 1 117 bZIP Transcription Factor Family AT2G31370 75.2 5.7e-38 155.6
Vvi12g210 ECH 1 230 bZIP Transcription Factor Family AT3G58120 56.4 2.8e-55 212.6
Vvi13g824 . 1 223 bZIP Transcription Factor Family AT3G56850 55.2 4.7e-61 231.9
Vvi2g737 . 1 352 bZIP Transcription Factor Family AT1G32150 64.2 5.0e-103 371.7
Vvi5g1269 . 1 284 bZIP Transcription Factor Family AT1G06070 74.0 8.3e-104 374.4
Vvi18g1279 . 1 168 bZIP Transcription Factor Family AT1G06070 61.4 1.1e-42 171.4
Vvi3g57 ECH 169 345 bZIP Transcription Factor Family AT1G06070 57.8 1.4e-39 161.0
Vvi13g162 ECH 9 138 bZIP Transcription Factor Family AT1G06070 66.9 6.1e-38 155.6
Vvi6g765 ECH 1 127 bZIP Transcription Factor Family AT1G06070 70.1 1.4e-37 154.5
Vvi13g824 . 1 196 bZIP Transcription Factor Family AT2G41070 57.5 1.9e-44 176.4
Vvi2g737 . 1 350 bZIP Transcription Factor Family AT2G35530 66.8 5.8e-110 394.8
Vvi13g162 ECH 9 199 bZIP Transcription Factor Family AT2G40620 58.0 4.3e-56 215.7
Vvi6g765 ECH 1 220 bZIP Transcription Factor Family AT2G40620 57.6 1.1e-54 211.1
Vvi18g1279 . 1 145 bZIP Transcription Factor Family AT2G40620 66.2 1.0e-41 167.9
Vvi3g57 ECH 184 334 bZIP Transcription Factor Family AT2G40620 62.3 1.1e-38 157.9
Vvi13g978 . 138 470 bZIP Transcription Factor Family AT5G06950 79.3 4.5e-137 484.6
Vvi8g1158 . 119 452 bZIP Transcription Factor Family AT5G06950 78.9 5.8e-137 484.2
Vvi1g279 . 121 454 bZIP Transcription Factor Family AT5G06950 74.2 9.3e-127 450.3
Vvi8g1240 . 135 430 bZIP Transcription Factor Family AT5G06950 61.4 2.7e-94 342.4
Vvi6g1220 . 188 472 bZIP Transcription Factor Family AT5G06950 61.4 8.0e-94 340.9
Vvi7g1127 ECH 52 347 bZIP Transcription Factor Family AT5G06950 58.3 1.5e-87 320.1
Vvi18g346 ECH 77 359 bZIP Transcription Factor Family AT5G06950 60.2 2.7e-86 315.8
Vvi6g1220 . 141 501 bZIP Transcription Factor Family AT1G08320 73.0 8.8e-139 490.3
Vvi8g1240 . 116 430 bZIP Transcription Factor Family AT1G08320 60.6 1.2e-98 357.1
Vvi13g978 . 182 469 bZIP Transcription Factor Family AT1G08320 63.5 4.4e-98 355.1
Vvi8g1158 . 164 451 bZIP Transcription Factor Family AT1G08320 63.5 5.8e-98 354.8
Vvi1g279 . 159 453 bZIP Transcription Factor Family AT1G08320 60.0 8.6e-94 340.9
Vvi18g346 ECH 77 359 bZIP Transcription Factor Family AT1G08320 56.7 2.4e-83 306.2
Vvi7g1127 ECH 65 347 bZIP Transcription Factor Family AT1G08320 56.2 6.9e-83 304.7
Vvi13g978 . 158 470 bZIP Transcription Factor Family AT5G06960 78.0 2.2e-125 445.7
Vvi8g1158 . 139 452 bZIP Transcription Factor Family AT5G06960 77.1 6.3e-125 444.1
Vvi1g279 . 147 454 bZIP Transcription Factor Family AT5G06960 71.8 4.2e-113 404.8
Vvi6g1220 . 179 472 bZIP Transcription Factor Family AT5G06960 59.0 3.8e-90 328.6
Vvi8g1240 . 116 430 bZIP Transcription Factor Family AT5G06960 58.7 8.6e-90 327.4
Vvi18g346 ECH 59 359 bZIP Transcription Factor Family AT5G06960 58.1 4.9e-85 311.6
Vvi7g1127 ECH 43 347 bZIP Transcription Factor Family AT5G06960 56.3 1.9e-84 309.7
Vvi8g484 . 217 678 bZIP Transcription Factor Family AT3G10800 50.5 4.0e-100 362.8
Vvi3g57 ECH 1 345 bZIP Transcription Factor Family AT4G38900 62.0 8.0e-99 358.2
Vvi13g162 ECH 13 127 bZIP Transcription Factor Family AT4G38900 79.1 1.6e-38 157.9
Vvi18g1279 . 20 132 bZIP Transcription Factor Family AT4G38900 76.1 1.5e-36 151.4
Vvi6g765 ECH 2 116 bZIP Transcription Factor Family AT4G38900 75.7 3.3e-36 150.2
Vvi3g57 ECH 4 344 bZIP Transcription Factor Family AT2G21230 60.1 4.0e-92 335.9
Vvi19g147 ECH 1 231 bZIP Transcription Factor Family AT2G42380 55.5 5.8e-58 221.5
Vvi12g210 ECH 1 230 bZIP Transcription Factor Family AT2G42380 55.5 1.7e-57 219.9
Vvi4g930 ECH 1 349 bZIP Transcription Factor Family AT4G36730 53.9 1.1e-63 240.7
Vvi13g978 . 138 470 bZIP Transcription Factor Family AT3G12250 79.0 4.9e-136 481.1
Vvi8g1158 . 119 452 bZIP Transcription Factor Family AT3G12250 78.4 7.1e-135 477.2
Vvi1g279 . 121 454 bZIP Transcription Factor Family AT3G12250 73.1 2.3e-125 445.7
Vvi6g1220 . 188 472 bZIP Transcription Factor Family AT3G12250 62.5 1.4e-93 340.1
Vvi8g1240 . 117 430 bZIP Transcription Factor Family AT3G12250 58.2 4.0e-93 338.6
Vvi7g1127 ECH 43 347 bZIP Transcription Factor Family AT3G12250 55.9 1.0e-85 313.9
Vvi18g346 ECH 72 359 bZIP Transcription Factor Family AT3G12250 58.5 2.6e-84 309.3
Vvi1g279 . 3 454 bZIP Transcription Factor Family AT1G68640 62.7 2.3e-144 509.2
Vvi8g1158 . 55 452 bZIP Transcription Factor Family AT1G68640 60.6 2.7e-124 442.6
Vvi13g978 . 56 470 bZIP Transcription Factor Family AT1G68640 59.6 2.8e-121 432.6
Vvi8g1240 . 123 430 bZIP Transcription Factor Family AT1G68640 56.8 1.8e-88 323.6
Vvi6g1220 . 186 472 bZIP Transcription Factor Family AT1G68640 59.3 1.2e-87 320.9
Vvi7g1127 ECH 56 347 bZIP Transcription Factor Family AT1G68640 54.8 7.3e-82 301.6
Vvi18g346 ECH 77 359 bZIP Transcription Factor Family AT1G68640 55.3 1.8e-80 297.0
Vvi18g1279 . 1 194 bZIP Transcription Factor Family AT1G43700 63.1 5.4e-53 205.3
Vvi3g57 ECH 132 307 bZIP Transcription Factor Family AT1G43700 55.4 2.4e-37 153.3
Vvi15g772 ECH 1 431 bZIP Transcription Factor Family AT2G46270 52.3 1.9e-88 323.2
Vvi4g458 . 1 147 bZIP Transcription Factor Family AT5G11260 71.6 5.1e-42 167.9
Vvi5g1269 . 1 290 bZIP Transcription Factor Family AT2G31370 70.2 2.1e-96 349.7
Vvi18g1279 . 19 168 bZIP Transcription Factor Family AT2G31370 67.1 9.4e-41 164.9
Vvi13g162 ECH 12 135 bZIP Transcription Factor Family AT2G31370 73.4 1.0e-39 161.4
Vvi6g765 ECH 1 117 bZIP Transcription Factor Family AT2G31370 75.2 5.7e-38 155.6
Vvi12g210 ECH 1 230 bZIP Transcription Factor Family AT3G58120 56.4 2.8e-55 212.6
Vvi13g824 . 1 223 bZIP Transcription Factor Family AT3G56850 55.2 4.7e-61 231.9
Vvi2g737 . 1 352 bZIP Transcription Factor Family AT1G32150 64.2 5.0e-103 371.7
Vvi5g1269 . 1 284 bZIP Transcription Factor Family AT1G06070 74.0 8.3e-104 374.4
Vvi18g1279 . 1 168 bZIP Transcription Factor Family AT1G06070 61.4 1.1e-42 171.4
Vvi3g57 ECH 169 345 bZIP Transcription Factor Family AT1G06070 57.8 1.4e-39 161.0
Vvi13g162 ECH 9 138 bZIP Transcription Factor Family AT1G06070 66.9 6.1e-38 155.6
Vvi6g765 ECH 1 127 bZIP Transcription Factor Family AT1G06070 70.1 1.4e-37 154.5
Vvi4g231 . 194 420 bZIP Transcription Factor Family AT5G24800 55.8 1.8e-54 209.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004403 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 2 1 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14754 PF00170 bZIP_1 1.10E-13 CL0018 Vvi TF