Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g458 ATGCAGGAACAAGCTACGAGTTCTCTTGCGGCCAGCTCTTTACCTTCTAGTAGCGAGAGATCTTCTAGTTCTGCTCTTCAAGCCGAAGTAAAGGAAGGAATGGAGAGTGACGAGGAGATCAGAAGAGTGCCAGAGATCGGCAGTGGGGACCCGGCGGGCCCATCAGCCTCCGGACGAGAGGCAGCTTTAGTGGCCGGTCCCGACCGGGTTCAGGCCTCAGGCGATGGTCAGAGAAAAAGAGGAAGAAGCCCGGCTGACAAAGAGAACAAGCGGTTAAAGAGGTTGTTGAGGAACAGAGTGTCAGCACAGCAAGCAAGGGAAAGGAAGAAAGCATACTTGAATGAGCTAGAGGTGAGGGTCAAAGACTTGGAGAGGAAGAACTCTGAGCTTGAAGAGAGGCTCTCCACCTTGCAAAATGAGAATCAGATGCTCAGACATATATTGAAGAACACCACAGCAAGCAGGAGAGGAGGAAGTAGTAATAATTCAAACGCAGATGGGTCTTTGTGA 510 50.78 MQEQATSSLAASSLPSSSERSSSSALQAEVKEGMESDEEIRRVPEIGSGDPAGPSASGREAALVAGPDRVQASGDGQRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLNELEVRVKDLERKNSELEERLSTLQNENQMLRHILKNTTASRRGGSSNNSNADGSL* 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4716173 4719590 + Vvi4g458 Vvi4g458 785237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g458 169 MobiDBLite consensus disorder prediction 1 94 - -
Vvi4g458 169 SMART brlzneu 86 150 IPR004827 GO:0003700|GO:0006355
Vvi4g458 169 Coils Coil 85 147 - -
Vvi4g458 169 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 93 108 IPR004827 GO:0003700|GO:0006355
Vvi4g458 169 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 1 158 IPR044280 GO:0000981|GO:0045944
Vvi4g458 169 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 1 158 - -
Vvi4g458 169 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 88 151 IPR004827 GO:0003700|GO:0006355
Vvi4g458 169 MobiDBLite consensus disorder prediction 149 169 - -
Vvi4g458 169 MobiDBLite consensus disorder prediction 31 45 - -
Vvi4g458 169 Gene3D Single helix bin 109 150 - -
Vvi4g458 169 CDD bZIP_HY5-like 91 142 - -
Vvi4g458 169 MobiDBLite consensus disorder prediction 73 94 - -
Vvi4g458 169 Pfam bZIP transcription factor 87 147 IPR004827 GO:0003700|GO:0006355
Vvi4g458 169 SUPERFAMILY Leucine zipper domain 90 148 IPR046347 GO:0003700|GO:0006355
Vvi4g458 169 MobiDBLite consensus disorder prediction 1 29 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14754 PF00170 bZIP_1 1.10E-13 CL0018 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g458 K16241 - vvi:104879018 252.292