Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g459 ATGGAAGCAAATGCGGGGATGGTTGCTGGATCGCACAAGAGGAACGAGCTTGTTCGGATTCGCCATGATTCTGATAGTGGGCCAAAGCCCCTGAAGCATTTGAATGGCCAAATATGCCAGATTTGTGGAGATACTGTTGGCCTTACAGCCGCTGGTGATGTCTTTGTTGCTTGCAATGAGTGTGCCTTCCCAGTTTGTCGGCCTTGTTATGAGTATGAGCGCAAAGATGGAAACCAGTCTTGTCCCCAGTGCAAGACTAGATATAAGAGACACAAAGGGAGCCCTCGAGTTGAAGGAGATGATGAAGAGGATGATGTTGATGATATAGAAAATGAGTTCAATTATGCCCAAGGAAATAGCAAAGCAAGACGCCAGTGGCAGGGAGAAGATGCTGACCTTTCCTCTTCCTCCAGACATGAGTCTCAACAACCTATTCCCCTTCTCACCAATGGGCAGCCACTGTCTGGAGAAATTCCCAGTGGTACACCTGACAATCAATCTGTGCGAACCACGTCTGGTCCTTTGGGCCCTGGCGAAAAGCATGTGCATTCACTGCCTTATGTTGATCCCAGGCAGCCAGTTCCCGTGAGAATTGTGGACCCTTCAAAGGACTTGAATTCTTATGGCCTGGGTAATGTCGACTGGAAGGAAAGGGTTGAAGGTTGGAAACTCAAACAGGAGAAAAATATGATGCAGGTGACTAGCAGATACCCTGAAGGGAAGGGAGATTTAGAGGGCACTGGTTCAAATGGAGAGGAATTGCAAATGGCTGATGATGCTCGTCAACCTTTGAGTCGAGTGGTGCCTATTCCATCATCTCACCTTACGCCTTATCGTGTTGTGATCATACTTCGACTTATAATCTTGGGCTTTTTCTTACAATATCGTACAACTCACCCTGTAAAAGATGCATATCCTTTGTGGTTAACATCTGTTATCTGTGAGATTTGGTTTGCCTTATCATGGCTGTTGGATCAGTTCCCAAAATGGTATCCAATTAATCGTGAGACCTTCCTTGAAAGGCTTGCATTGAGATATGATCGTGAAGGGGAACCTTCACAGCTGGCTCCTATAGATGTATTTGTTAGTACGGTGGATCCTCTCAAAGAGCCTCCTCTTGTAACAGCTAACACTGTGCTGTCCATTCTTGCTGTGGATTACCCTGTCGACAAAGTCTCTTGCTATGTTTCAGATGATGGGTCTGCAATGTTGACCTTTGAAGCCCTTTCTGAAACTTCTGAATTTGCAAGGAAGTGGGTTCCCTTCTGCAAGAAGCACAACATCGAGCCTAGGGCCCCTGAGTTTTATTTTGCCCAAAAGATCGATTACTTGAAGGACAAGATACAGCCTTCTTTTGTGAAAGAGCGCAGGGCTATGAAGAGAGAATATGAAGAGTTTAAGATACGAATCAATGCACTTGTTGCTAAAGCACAGAAGACGCCAGAAGAAGGTTGGACAATGCAGGATGGCACTCCTTGGCCTGGAAATAACCCTAGGGATCATCCAGGAATGATTCAGGTGTTCTTAGGCCACAGTGGGGGTCTTGACACAGATGGAAATGAGCTGCCCAGACTAGTTTATGTTTCTCGTGAGAAAAGGCCGGGCTTCCAGCATCATAAGAAAGCTGGAGCAATGAATGCTTTGATTCGAGTTTCAGCTGTCTTGACCAATGGTGCTTATCTCTTGAATGTCGATTGTGATCACTACTTCAATAACAGCAAAGCTCTTAAAGAAGCCATGTGTTTCATGATGGATCCAGCTTTTGGAAAGAAAACCTGTTATGTACAATTCCCACAGCGGTTTGATGGCATTGATTTGCATGATCGATATGCTAATCGTAATATTGTCTTCTTTGATATCAACTTGAAAGGGCTGGATGGCGTCCAGGGGCCAGTCTATGTGGGAACAGGATGTTGTTTCAACAGGCAAGCGCTATATGGATATGATCCAGTGTTAACTGAGGCAGATTTGGAGCCAAATATTATTGTAAAGAGTTGTTGTGGTTCAAGAAAGAAGGGACGGGGTGGCAACAAGAAATACATTGATAAGAAGAGGCAAGTGAAAAGAACTGAATCAACCATCCCTATTTTCAATATGGAAGACATTGAAGAGGGTGTTGAAGGATATGATGATGAGAAGTCACTTCTTATGTCTCAGAAAAGCTTAGAGAAGCGATTTGGTCAGTCCCCTGTTTTTATTGCAGCCACCTTCATGGAACAGGGTGGCATTCCTCCATCAACTAATCCTGCAACCCTTTTAAAAGAGGCAATCCATGTTATTAGCTGTGGATATGAAGACAAGACTGACTGGGGCAAAGAGATTGGATGGATTTATGGTTCTGTGACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGTTGGATTTCAATATATTGCATGCCACCCCGCCCAGCATTTAAGGGGTCTGCTCCCATCAATCTTTCTGATCGTTTGAATCAGGTTCTTCGATGGGCCTTGGGATCTATTGAGATCCTGCTGAGCAGGCATTGCCCCATATGGTATGGCTACAATGGGAGGCTCAAGCTCTTGGAGAGACTGGCATACATCAATACCATTGTTTATCCTCTCACTTCTATCCCCCTGATTGCTTACTGTGTCCTTCCTGCTATTTGCCTTCTAACAGGGAAATTCATCATTCCTGAGATAAGTAACTTTGCTAGCATGTGGTTTATTCTCCTCTTTGTCTCCATTTTCGCTACTGGAATACTTGAGCTTAGATGGAGTGGTGTCAGCATCTGA 2766 44.65 MEANAGMVAGSHKRNELVRIRHDSDSGPKPLKHLNGQICQICGDTVGLTAAGDVFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPRVEGDDEEDDVDDIENEFNYAQGNSKARRQWQGEDADLSSSSRHESQQPIPLLTNGQPLSGEIPSGTPDNQSVRTTSGPLGPGEKHVHSLPYVDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNMMQVTSRYPEGKGDLEGTGSNGEELQMADDARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRTTHPVKDAYPLWLTSVICEIWFALSWLLDQFPKWYPINRETFLERLALRYDREGEPSQLAPIDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETSEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKIRINALVAKAQKTPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAFGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGVQGPVYVGTGCCFNRQALYGYDPVLTEADLEPNIIVKSCCGSRKKGRGGNKKYIDKKRQVKRTESTIPIFNMEDIEEGVEGYDDEKSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCVLPAICLLTGKFIIPEISNFASMWFILLFVSIFATGILELRWSGVSI* 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4723813 4732677 + Vvi4g459 Vvi4g459 785238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g459 921 MobiDBLite consensus disorder prediction 137 173 - -
Vvi4g459 921 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Vvi4g459 921 MobiDBLite consensus disorder prediction 75 189 - -
Vvi4g459 921 Pfam Cellulose synthase 358 921 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vvi4g459 921 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 19 921 - -
Vvi4g459 921 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Vvi4g459 921 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 516 653 IPR029044 -
Vvi4g459 921 PANTHER CELLULOSE SYNTHASE 19 921 - -
Vvi4g459 921 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Vvi4g459 921 SUPERFAMILY RING/U-box 22 111 - -
Vvi4g459 921 Pfam Zinc-binding RING-finger 29 106 IPR027934 -
Vvi4g459 921 Coils Coil 456 476 - -
Vvi4g459 921 SUPERFAMILY Nucleotide-diphospho-sugar transferases 376 650 IPR029044 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g459 K10999 - vvi:100254408 1873.6