Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g46 ATGTCTGGAAAATTTGGTTCCTTTCTGTGGATCTACACTTCTCCGTTTCTCTACTGGAAGCCTCCTTCTCTGCTTCTCCAGATCCATCATCAATTCCACCAATTCGATCCACTCCGTTGCAGATCCGCCATGGATTTCATGAAAGTCTTCGATCAGACGGTCCGAGAAATAAAGAGGGAGGTGAATCTGAAGGTTTTGAAGGTTCCAGAGATCGAGCAGAAGGTACTGGATGCAACCGACAATGAACCTTGGGGCCCTCATGGCTCTGCCCTGGCAGAAATAGCTCAGGCCACTAAAAAATTCACTGAATGTCAGATGGTTATGAATGTTCTGTGGACAAGATTAAGTGATTCTGGCCGAGACTGGCGCCATGTCTATAAGTCACTGGCTGTTATAGAGTATTTGGTGGCTAATGGATCTGAACGTGCTGTTGATGATATAATTGAACACACTTTCCAAATCTCATCACTTTCAGGATTTGAGTATGTTGAACCAAATGGGAAGGATGTTGGAATCAATGTGAGGAAGAAGGCTGAAACCATTGTGGCTCTTTTGAATAACAAAGAAAAAATACAAGAAGTTAGAAATAAAGCTGCTGCAAACCGCGACAAGTTCTTTGGACTTTCCTCATCTGGAGTGACATACAAGTCTAGTTCAGCCCCATATGGCAGCAGCAGCTTTCAGAGTGCTGATCAGCATGGAGGTATGAGTAGCAAACGAGAAAATGATTCATTTAGGGATAGTTATAAAGACAGGGATCGGTTTGATGAAGAAAAGGTCGACGAGGATACTTCTGCTAAGTCACGTCAAGGGGTTACCAGTGAGAATGAAGGGAACACCTTTAAAAAGGGATCTGCACGCTATAGCAGCAAGGATAAAGATACTTTGTCAACAAAGGCAAATTACTCTGACAAGTACGGGTCAATTCCCTCCCACAGTTCAAGTGTGCCTTCAATTAATGATGAAGATGATTTTGATGACTTTGATCCCCGGGGAACTTCCAGTACCAAGACCACTGCTGGAAACATTAACCAACCAGACCTGTTTGGGCAAAGTTTGATTGGTGACCTCATGGATGCACCGGCACCTGTTCCCACAGAAATGTCTGCCATCAACAGCAATTCTGCAGAGCCTGATCTGTTTGCAGATGCAACTTTTGTTTCAGCGCCACCTCATGTAGAAGAAGGTTCTAGTTCTCAGGTTGAGGCGAAGGTTGATCTATTTGGGTCTCAACCTGCTGGTCCTTCTGCGAATCCTCCAGCATTTGACTTTTTTGCTGCCCCTGATCCAGTTGTGCAATCAGAAACCAAGTCTCAAAAATCTGACACAGCCAGCCCCGACATTGTTGATCCATTTGCTGCAGTTCCACTAAACAGTTTTGATGGATCAGATCTTTTTGGTTCATTCACTTCCCATACCAACTCTGCATCTACAGAGCCTACACAAAGTCCTGCAAATGATGGCAACCTTAACAATTTGAATGGAAAATCCTCTGCAGAATTTCAACCTCCACCCAAGAAGGATGCTTTCCAGGTTAAATCTGGAATTTGGGCAGATTCACTGAGCCGTGGACTGATTGATCTTAATATATCCGCACCCAAGAAGATAAATCTAGCAGATGTTGGCATTGTGGGAGGATTGAGTGATGGATCGGATGAAAGGGAGAAGGGACCCCAAACTTCGTTTTCCATGGGACAAGCCATGGGTATTGGCTCCGGTCTTGGTAAATCTGGGTTTACATCTCCACCAACAGGTGGAGTTGGTGGAGATGACATCTTCTCAAGTCTCGGCAGCCAGCAATACCAATTCGGAGGCTTCAAGAAATAA 1827 44.61 MSGKFGSFLWIYTSPFLYWKPPSLLLQIHHQFHQFDPLRCRSAMDFMKVFDQTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGSALAEIAQATKKFTECQMVMNVLWTRLSDSGRDWRHVYKSLAVIEYLVANGSERAVDDIIEHTFQISSLSGFEYVEPNGKDVGINVRKKAETIVALLNNKEKIQEVRNKAAANRDKFFGLSSSGVTYKSSSAPYGSSSFQSADQHGGMSSKRENDSFRDSYKDRDRFDEEKVDEDTSAKSRQGVTSENEGNTFKKGSARYSSKDKDTLSTKANYSDKYGSIPSHSSSVPSINDEDDFDDFDPRGTSSTKTTAGNINQPDLFGQSLIGDLMDAPAPVPTEMSAINSNSAEPDLFADATFVSAPPHVEEGSSSQVEAKVDLFGSQPAGPSANPPAFDFFAAPDPVVQSETKSQKSDTASPDIVDPFAAVPLNSFDGSDLFGSFTSHTNSASTEPTQSPANDGNLNNLNGKSSAEFQPPPKKDAFQVKSGIWADSLSRGLIDLNISAPKKINLADVGIVGGLSDGSDEREKGPQTSFSMGQAMGIGSGLGKSGFTSPPTGGVGGDDIFSSLGSQQYQFGGFKK* 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 572417 580248 + Vvi4g46 Vvi4g46 784825

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g46 608 MobiDBLite consensus disorder prediction 269 285 - -
Vvi4g46 608 Gene3D - 67 206 IPR008942 -
Vvi4g46 608 PANTHER EPSIN/ENT-RELATED 44 600 - -
Vvi4g46 608 CDD ENTH 71 187 - -
Vvi4g46 608 MobiDBLite consensus disorder prediction 300 318 - -
Vvi4g46 608 ProSiteProfiles ENTH domain profile. 63 195 IPR013809 -
Vvi4g46 608 MobiDBLite consensus disorder prediction 236 268 - -
Vvi4g46 608 MobiDBLite consensus disorder prediction 468 508 - -
Vvi4g46 608 PANTHER CLATHRIN INTERACTOR EPSIN 1 44 600 IPR033521 GO:0006623|GO:0030276
Vvi4g46 608 MobiDBLite consensus disorder prediction 548 593 - -
Vvi4g46 608 MobiDBLite consensus disorder prediction 468 499 - -
Vvi4g46 608 MobiDBLite consensus disorder prediction 216 235 - -
Vvi4g46 608 SUPERFAMILY ENTH/VHS domain 50 195 IPR008942 -
Vvi4g46 608 MobiDBLite consensus disorder prediction 216 348 - -
Vvi4g46 608 SMART enth_2 69 195 IPR013809 -
Vvi4g46 608 MobiDBLite consensus disorder prediction 332 348 - -
Vvi4g46 608 MobiDBLite consensus disorder prediction 408 449 - -
Vvi4g46 608 Pfam ENTH domain 70 190 IPR013809 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g46 K12471 EPN; epsin - vvi:100264697 1083.55
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g46 . . . . . . . . Cmo05g00117 Cmo12g00561 . Cma05g00111 . Car12g00571 . Cpe07g00544 . Bhi04g00480 . . . Hepe08g1372 . Lcy13g2167 . . . . . . . Cone4ag1645 Cone7ag1303 . . . . . . . . . . . . . . . . . . Cma12g00623 . Car05g00096 Cpe11g00091 . . . . . . . . . . . . . . . Lsi08g01563 Csa02g01858 Chy03g01627 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006203 1 2 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 1 1 1 38