Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g465 ATGAACCATAGAGCTGTTGAACAACCCTGCTTGGATATCCTCCAAGCCTGTAACACTCTTCCCAAACTCGCTCAACTCCATACCCACATTATCAAATTGGGTTTCCAGAATAACCCTTTAGTCCTCACCAAGTTCACTTCTGCTTCGTCCAATCTCGATGCCATCCCCTACGCGATGTCGCTTGTTTTCTCAGTGGAAGATGCCCGTGTCTATGACGCCTTCCTTTTCAGTACTATCATTAGAGCTTACGCTGAAAGTAGTCAATCCAAGCACAATGCTATATTTTATTATAACCTCATGCTTGGATATGGGATTTCGCCCAATAAATATGCGTTTCCCTTCGTTCTAAAGGCCTGCGCAGGTCTTAGGGACTTGAATTTGGGTAAGGCGGTTCATGGTTCATTGGTAAAATTTGGGTTTGATGATGATATTTTTGTGCAGAACACTATGGTTCACATGTATTGCTGCTGTTCCGGAGGGATGGAGTTTGCTAGGAAGTTGTTCGATGAAATGCCAAAGTTGGACCCGGTTACGTGGACTGCAATGATTGGCGGGTACGCACGTTTGGGCCAGTCTGCTGGTGCTGTTGGGCTGTTTAGGAAGATGCAGATTGCAGGTGTTTGCCCAGATGATGTTACCATGGTTTCCGTTCTGTCTGCTTGTACTGATTTAGGTGCCCTTGAGCTTGGAAAATGGATTGAGTCTTATATCGAGAAGGAAAGGGTTTTAAAAACTGTAGAGCTCTCTAATGCCCTCGTAGACATGTTTGCAAAGTGTGGGGATGTTGATAAAGCATTGGGGTTATTTAGAAACATGAGCAAGAGAACAATTGTTTCTTGGACTTCTGTCATCGTTGGCCTGGCTATGCATGGTCGAGGATTGGAGGCCGTTTCTTTATTTGAGGAGATGAAAGCATCTGGGATGGTCCCAGAAGATATTGCATTTATTGGGTTGCTCTCAGCTTGTAGTCACTCAGGTTTAGTTGAAAGGGGCAGGCAATACTTTAGTGAAATGACTAGGCAATTTGGCATTGTACCTAAGATAGAGCACTATGGATGCATGGTGGATTTGTTAAGCAGGGCTGGACTTGTCACTGAGGCACTAGAGTTTGTTGAAAGAATGCCCATTGAGCCAAACCCAATAATCTGGCGAACTCTGATTAGTGCTTGCCGCGTCCATGGTGAGCTCAAGCTTGGGGAAAGCATCAGTAAACAGTTAATCAGAAATGAACCCATGCATGAGTCAAACTATGTGTTACTTTCCAATATCTATGGAAAAATGTTAGATTGGGAGAAGAAATCCAAGATTAGAGTTGCTATGGGGAAGAAAGGGATCCAAAAGGTCCCAGGAAGCACCATGATTGAACTAGACAATGAAATTCATGAATTTATTGTAGGAGATAGATCACATAATCAATATAATGAAATTATTAAGATGGTGAATGAGATGGGGAGGGAAATGAAGAGGGCTGGATATGCTCCTACTACAACAGAGGTGTTTCTTGATATTGATGAAGAAGATAAAGAAGATGCTTTAAGTAGACATAGCGAAAAGCTGGCTATTGCTTTTGCACTTCTGAACACACCACCAGGATCTCCTATTCGGATTACAAAGAATTTGCGGGTTTGTGGTGATTGTCACTCTGCTTCTAAGTTCATCTCCAAGATTTATAATCGAGAAATTGTGATGAGAGACAGGAGCCGGTTTCACCATTTCAGAGATGGGCAATGTTCATGTGGAGATTTCTGGTGA 1752 42.92 MNHRAVEQPCLDILQACNTLPKLAQLHTHIIKLGFQNNPLVLTKFTSASSNLDAIPYAMSLVFSVEDARVYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACRVHGELKLGESISKQLIRNEPMHESNYVLLSNIYGKMLDWEKKSKIRVAMGKKGIQKVPGSTMIELDNEIHEFIVGDRSHNQYNEIIKMVNEMGREMKRAGYAPTTTEVFLDIDEEDKEDALSRHSEKLAIAFALLNTPPGSPIRITKNLRVCGDCHSASKFISKIYNREIVMRDRSRFHHFRDGQCSCGDFW* 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4774936 4776688 + Vvi4g465 Vvi4g465 785244

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g465 583 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Vvi4g465 583 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 275 IPR002885 -
Vvi4g465 583 PANTHER - 15 569 - -
Vvi4g465 583 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 15 569 - -
Vvi4g465 583 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
Vvi4g465 583 Pfam E motif 393 455 IPR046848 -
Vvi4g465 583 Pfam PPR repeat family 175 221 IPR002885 -
Vvi4g465 583 Pfam DYW family of nucleic acid deaminases 491 583 IPR032867 GO:0008270
Vvi4g465 583 Gene3D Tetratricopeptide repeat domain 249 462 IPR011990 GO:0005515
Vvi4g465 583 Gene3D Tetratricopeptide repeat domain 87 242 IPR011990 GO:0005515
Vvi4g465 583 TIGRFAM PPR: pentatricopeptide repeat domain 278 310 IPR002885 -
Vvi4g465 583 TIGRFAM PPR: pentatricopeptide repeat domain 250 275 IPR002885 -
Vvi4g465 583 TIGRFAM PPR: pentatricopeptide repeat domain 177 210 IPR002885 -
Vvi4g465 583 Pfam PPR repeat 250 275 IPR002885 -
Vvi4g465 583 Pfam PPR repeat 350 374 IPR002885 -
Vvi4g465 583 Pfam PPR repeat 278 307 IPR002885 -
Vvi4g465 583 Pfam PPR repeat 155 173 IPR002885 -
Vvi4g465 583 Pfam PPR repeat 318 340 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g465 - - - vvi:100255899 1176.77
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g465 . . . . . . . . . Cmo12g00282 . . . Car12g00314 . . . Bhi04g00972 . . . . . . . . . . . . . . . . . . . . . . . . Bda13g01266 Bpe14g00577 . . . . . . . Cma12g00333 . . . . . . . . . . . . . . . . . . Lsi08g01196 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000117 7 10 4 7 7 7 7 7 6 8 6 5 7 4 3 8 6 7 7 7 7 7 6 6 2 5 4 4 5 11 187