Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g468 ATGGCTTCATCATTCAATTTAGATAAAGCCACTGTCTTCTCCTACATTGAAGTTTGTGATGCAACTTGCAACTTCAGTATGTCTTTAAAGATTGGCCAAGGATCTTATGGGTCTGTTTACCTTGGAAAATTAAGAGGAATTGATGTGGCCATCAAGCAAATGAAAGAGACAAAGTCAAAAGAGTTCTTCTCTGAGCTCCATATTCTTTCAAGAGTTCACCATACCAACTTGATTAAGCTTATTGGATATGCGGGTGGTGGCGACTCTCTGTTTCTAGTATATGAATTTGCCCAAAATGGAGCATTGAGCCATCATTTGCATAGACCCACTGCAAGAGGTTATAAACCTCTTGAATGGACCACACGACTTCAGATTGCTCTTGATGCAGCAAGAGGCCTTGAGTATATACATGAGCACACAAAACCATATTATGTTCATCGAGATGTGAAAACAAGCAATATTCTCTTAGATTCCAATTTTCGGGCAAAGATCGCAGATTTTGGACTAGTGAAACTATTTGAACATTCTCCAAACTCAGCAGCTGCAGCATCTAGAATTGTGGGCACATTTGGTTATCTTGCTCCTGAGTACATTCGTGACGGGTGTGTGACCACAAAGAGTGATGTCTATGCTTATGGAGTTGTTCTTATGGAACTACTTACTGGCCAACCAGCACTTAGTAGAGATGCAAATCCTGGAAACGATCAGTACATCGAACATCGCTCTCTGGTGGAATATGTAAGTCCACATCAGATTCCAATGTTCTGTCGAATTGCTACAAGATATTGA 789 40.43 MASSFNLDKATVFSYIEVCDATCNFSMSLKIGQGSYGSVYLGKLRGIDVAIKQMKETKSKEFFSELHILSRVHHTNLIKLIGYAGGGDSLFLVYEFAQNGALSHHLHRPTARGYKPLEWTTRLQIALDAARGLEYIHEHTKPYYVHRDVKTSNILLDSNFRAKIADFGLVKLFEHSPNSAAAASRIVGTFGYLAPEYIRDGCVTTKSDVYAYGVVLMELLTGQPALSRDANPGNDQYIEHRSLVEYVSPHQIPMFCRIATRY* 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4793094 4794952 - Vvi4g468 Vvi4g468 785247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g468 262 SMART serkin_6 25 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g468 262 ProSitePatterns Protein kinases ATP-binding region signature. 31 52 IPR017441 GO:0005524
Vvi4g468 262 SUPERFAMILY Protein kinase-like (PK-like) 8 239 IPR011009 -
Vvi4g468 262 Gene3D Transferase(Phosphotransferase) domain 1 97 260 - -
Vvi4g468 262 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 1 247 IPR044812 GO:0019199|GO:0045087
Vvi4g468 262 ProSiteProfiles Protein kinase domain profile. 25 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g468 262 PANTHER KINASE FAMILY PROTEIN / PEPTIDOGLYCAN-BINDING LYSM DOMAIN-CONTAINING PROTEIN 1 247 - -
Vvi4g468 262 Pfam Protein kinase domain 29 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g468 262 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Vvi4g468 262 Gene3D Phosphorylase Kinase; domain 1 4 96 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76624 PF00069 Pkinase 1.20E-46 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g468 - - vvi:100250732 498.049