Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g469 ATGTTGCTTGAGTTAGCTCTCAAAAGCATACAAAGAAAGGAATTTAATTTTCCTCATGGTTTAATACTGGTTTTTGTTTTCAAACATCAACTTCGCTCAAAACAACATAGGCTTCAATTGATAATAGCCTACTTATATCCCCTACATGTACATGCCCATAAGAAGAGTAGTGCCTTGGTCTCTATCATCGATCGGTTGCCATGTTTATGCTTCTGGTTAATGAAACTTCACCAACTTCATCAACAAACATGGTTGGGAGGGTTTTATATCGTCACCCTGTGCAAGCATGGCCGGCACTTATCACTACCACCTTCACAGTTAGGATCTCCCCCTTCCCCAATTCAACTGGGTCTGGCGATGGAATGGCCTTTATCATGGCACAGGATAGCCAACCCTCCCCAGCTGGTAGCTTTGGCTCGTTTCTTGGAATCCTGGACAGGTGGGGTTGTTCGTCAGCTAGCTGTGGAGCTAGACACCTATATGAATGAGTTTGACCCAGATGCTAACCATATTGGGATTGATACAACAAGCATAGCGATTCCAATTGCAGCAAAGAGCCTAAGTGGCACTGGGGTCGATCTTAAAAGTGGAAGAGAAGTCAAGGTTAAGATTGATTATGATGGATGGAGAGAGACCCTTCACATTTCTGTTGGGTATGCAGGGAATCCTCTTCTGAGCTTTCTCAACCATTCCATAGCCTTGTCAGATACGGTTCCAAGCTCTGTCTATGTGGGCTTTACAGGCTCCACTGGGACTGTTTCAGAGACCCATCAGGTCCTTGACTGGGCATTCACATCAATACCGATAACATGTAGCTCTTCCAAGTGCAGTGGAAATGATAAAACAAAAACCATATTGATCATTGTTTTTCCAGTCACCGTGGCTATGTTGGTTTTGGTGATGTGTGGGATTCTTTCAGTCCTGAGAGTTGTCAAGAGGAGAAATGGGAGGATTGACAGAGAAGATTTCGAAAGCCGCTCAAGGTCTGCTGCAAATGTCCCTAAAATGTTTACTTATAAACAGCTCTCAAAGGCTACCCACAACTTCAGCAAAGAAAACCTGTTGGGGGCTGGTGGATTTGGAACTGTTTACAAAGGCATTTTGTCTGATCATCCTTCCCCTATAGCAGTCAAGAAGATTTCAGCAACCTCAAAGCAAGGCGAGAGGGAGTATTTGGCAGAAATATGCACTATAGGCCGCCTGAGGCACAAAAACATAGTACAACTCCAGGGATGGTGCCATGAGGGCAAGCATCTCCTCCTAGTATATGAATATATGTCGAATGGCAGCCTTGATCGCTTCATTGGCCGGTGTTTTCTTGACTGGAAAACCAGATCAAGAGGAATTACAGAGGAGACTAGCTTGGTGGATTATGTATGGATTTTGCATGGAAAGGATGCATTGCTCCAATGTGTGGACAGCATGCTCAAAGGCGAGTTCGATGAGGAGCAAGTGAAGAGGACTCTAGTGGTAGGCCTTGCTTGTCTGCATCCAGATTTTATGCTCAGGCCTAGGATGAGGAAGGTGATTCAAATCCTTCTCAATCCAAATGAACCTCTAATGGATTTGCCAGAAGCTCGACCCAGTGGAATCTTTGTACCAGTACCCTCTTCTGCTGCAACCGTTACTGATTTCGGCTCCTTTGCTGCCTCTGCTTCATACTCAAATGGGAAGATGGCAGATGAGACAGAAGTCCAATACGGCCTGTGA 1710 45.03 MLLELALKSIQRKEFNFPHGLILVFVFKHQLRSKQHRLQLIIAYLYPLHVHAHKKSSALVSIIDRLPCLCFWLMKLHQLHQQTWLGGFYIVTLCKHGRHLSLPPSQLGSPPSPIQLGLAMEWPLSWHRIANPPQLVALARFLESWTGGVVRQLAVELDTYMNEFDPDANHIGIDTTSIAIPIAAKSLSGTGVDLKSGREVKVKIDYDGWRETLHISVGYAGNPLLSFLNHSIALSDTVPSSVYVGFTGSTGTVSETHQVLDWAFTSIPITCSSSKCSGNDKTKTILIIVFPVTVAMLVLVMCGILSVLRVVKRRNGRIDREDFESRSRSAANVPKMFTYKQLSKATHNFSKENLLGAGGFGTVYKGILSDHPSPIAVKKISATSKQGEREYLAEICTIGRLRHKNIVQLQGWCHEGKHLLLVYEYMSNGSLDRFIGRCFLDWKTRSRGITEETSLVDYVWILHGKDALLQCVDSMLKGEFDEEQVKRTLVVGLACLHPDFMLRPRMRKVIQILLNPNEPLMDLPEARPSGIFVPVPSSAATVTDFGSFAASASYSNGKMADETEVQYGL* 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4797332 4800203 - Vvi4g469 Vvi4g469 785248

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g469 569 Pfam Protein kinase domain 350 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g469 569 ProSitePatterns Protein kinases ATP-binding region signature. 355 379 IPR017441 GO:0005524
Vvi4g469 569 Gene3D Transferase(Phosphotransferase) domain 1 426 521 - -
Vvi4g469 569 ProSiteProfiles Protein kinase domain profile. 349 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g469 569 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IX.1-LIKE 151 446 - -
Vvi4g469 569 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IX.1-LIKE 453 545 - -
Vvi4g469 569 SUPERFAMILY Protein kinase-like (PK-like) 331 447 IPR011009 -
Vvi4g469 569 Pfam Legume lectin domain 152 267 IPR001220 GO:0030246
Vvi4g469 569 Gene3D Phosphorylase Kinase; domain 1 334 425 - -
Vvi4g469 569 ProSitePatterns Legume lectins beta-chain signature. 153 159 IPR019825 -
Vvi4g469 569 Gene3D - 136 284 - -
Vvi4g469 569 PANTHER - 151 446 - -
Vvi4g469 569 PANTHER - 453 545 - -
Vvi4g469 569 SUPERFAMILY Concanavalin A-like lectins/glucanases 152 369 IPR013320 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g469 - - - vvi:100245599 604.364
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g469 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0071663 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76625 PF00139 Lectin_legB 1.30E-24 CL0004 Vvi PK