Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g470 ATGGGAGAAACAAGGGACAACGATGCTTACGAGGAAGAGCTTCTCGACTACGAGGAAGAAGAAGACAAAGCCCCCGACTCCGTCACCGGAAAAGTCAACGGCGAAGCCGCCAAGAAGGGCTATGTTGGAATTCACAGTTCAGGATTCAGAGACTTCCTTTTGAAGCCAGAACTTCTTCGGGCAATTGTGGACTCGGGGTTTGAGCATCCTTCTGAAGTTGACTCTTCATATCTGCTTCATTTTTTCCCAACTATTGTGCTGCTTTCCTTCATTCTGCTCTTTGGTTTTCTATTTTGTGGTTTTCTTTCTTTAGGTCTGCTAAAGGTTTCAGTTTTATCAAAAAATTGCCTTGGTCATGAAGTAATTCACTATTATCATACTCTTGATTTCGGAGAAGTAAAATGGTTTATGCAACATGAGTGTATCCCTCAAGCTATCTTGGGCATGGATGTTATTTGTCAAGCTAAATCGGGGATGGGAAAAACTGCTGTGTTTGTTCTGTCAACCCTGCAACAAATTGAGCCTGTCACAGGTCAAGTCGCAGCTCTCGTTCTATGCCATACAAGGGAGTTAGCTTACCAGATCTGCCACGAGTTCGAGAGATTCAGTACTTATTTACCTGATATCAAGGTTGCTGTTTTCTATGGTGGCGTCAATATAAAAATTCACAAGGATCTTTTAAAAAATGAATGCCCTCATATTGTTGTTGGAACACCTGGAAGGATACTGGCACTTGCTAGAGACAAGGACCTTGCTTTAAAGAATGTGAGACACTTTATCCTTGATGAATGTGACAAGATGCTTGAATCACTTGACATGAGGAGGGATGTTCAAGAGATCTTCAAGATGACTCCTCATGATAAGCAGGTTATGATGTTTTCAGCAACCCTCAGCAAGGAAATCCGCCCTGTTTGCAAGAAATTTATGCAAGATCCTATGGAAATTTATGTTGATGACGAGGCCAAGTTGACCCTTCATGGTCTTGTACAGCACTACATCAAACTGAGTGAGCTTGAGAAAAATCGCAAGTTGAATGATCTCCTTGATGCATTGGACTTCAATCAAGTTGTTATCTTCGTCAAAAGTGTGAGTAGAGCCGCAGAGCTGAACAAGTTACTTGTGGAGTGCAATTTCCCGTCTATCTGCATCCATTCTGGGATGCCCCAGGAAGAAAGGTTGACACGCTACAAGGGTTTCAAGGAGGGGCATAAAAGGATTCTTGTGGCCACGGATTTGGTTGGTAGGGGAATTGACATTGAGCGTGTCAATATTGTTATAAACTATGACATGCCAGATTCTGCAGACACTTATCTGCACAGGGTTGGTAGAGCTGGAAGATTTGGCACCAAAGGACTTGCAATTACATTTGTTTCATCAGCTTCTGACTCTGATGTTCTTAATCAGGTCCAGGAGAGATTTGAGGTGGATATTAAGGAGCTCCCTGAGCAGATTGATACCTCTACATACAGAGAGAAAAAGGGTGAAGAGAAAAGAAGAACGAAGGAAGAGGAGGGCAGACTGTGCCATCGTAATGAAACTCGGGTGGGCTACACAGAAGCTTCATAG 1566 42.98 MGETRDNDAYEEELLDYEEEEDKAPDSVTGKVNGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVDSSYLLHFFPTIVLLSFILLFGFLFCGFLSLGLLKVSVLSKNCLGHEVIHYYHTLDFGEVKWFMQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVTGQVAALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALARDKDLALKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMPQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQIDTSTYREKKGEEKRRTKEEEGRLCHRNETRVGYTEAS* 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4803495 4813915 - Vvi4g470 Vvi4g470 785249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g470 521 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 343 488 IPR001650 -
Vvi4g470 521 SMART ultradead3 129 331 IPR014001 -
Vvi4g470 521 SMART helicmild6 367 448 IPR001650 -
Vvi4g470 521 MobiDBLite consensus disorder prediction 484 521 - -
Vvi4g470 521 Pfam DEAD/DEAH box helicase 137 301 IPR011545 GO:0003676|GO:0005524
Vvi4g470 521 Gene3D - 324 492 IPR027417 -
Vvi4g470 521 Pfam Helicase conserved C-terminal domain 341 448 IPR001650 -
Vvi4g470 521 CDD SF2_C_DEAD 328 457 - -
Vvi4g470 521 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 315 IPR014001 -
Vvi4g470 521 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 47 75 IPR014014 GO:0003724
Vvi4g470 521 CDD DEADc_DDX39 46 317 - -
Vvi4g470 521 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE ISOFORM X1 28 487 - -
Vvi4g470 521 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 28 487 - -
Vvi4g470 521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 465 IPR027417 -
Vvi4g470 521 Gene3D - 43 323 IPR027417 -
Vvi4g470 521 MobiDBLite consensus disorder prediction 484 513 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g470 Vvi9g531 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g470 K12812 - vvi:100250852 695.656