Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi4g470 | ATGGGAGAAACAAGGGACAACGATGCTTACGAGGAAGAGCTTCTCGACTACGAGGAAGAAGAAGACAAAGCCCCCGACTCCGTCACCGGAAAAGTCAACGGCGAAGCCGCCAAGAAGGGCTATGTTGGAATTCACAGTTCAGGATTCAGAGACTTCCTTTTGAAGCCAGAACTTCTTCGGGCAATTGTGGACTCGGGGTTTGAGCATCCTTCTGAAGTTGACTCTTCATATCTGCTTCATTTTTTCCCAACTATTGTGCTGCTTTCCTTCATTCTGCTCTTTGGTTTTCTATTTTGTGGTTTTCTTTCTTTAGGTCTGCTAAAGGTTTCAGTTTTATCAAAAAATTGCCTTGGTCATGAAGTAATTCACTATTATCATACTCTTGATTTCGGAGAAGTAAAATGGTTTATGCAACATGAGTGTATCCCTCAAGCTATCTTGGGCATGGATGTTATTTGTCAAGCTAAATCGGGGATGGGAAAAACTGCTGTGTTTGTTCTGTCAACCCTGCAACAAATTGAGCCTGTCACAGGTCAAGTCGCAGCTCTCGTTCTATGCCATACAAGGGAGTTAGCTTACCAGATCTGCCACGAGTTCGAGAGATTCAGTACTTATTTACCTGATATCAAGGTTGCTGTTTTCTATGGTGGCGTCAATATAAAAATTCACAAGGATCTTTTAAAAAATGAATGCCCTCATATTGTTGTTGGAACACCTGGAAGGATACTGGCACTTGCTAGAGACAAGGACCTTGCTTTAAAGAATGTGAGACACTTTATCCTTGATGAATGTGACAAGATGCTTGAATCACTTGACATGAGGAGGGATGTTCAAGAGATCTTCAAGATGACTCCTCATGATAAGCAGGTTATGATGTTTTCAGCAACCCTCAGCAAGGAAATCCGCCCTGTTTGCAAGAAATTTATGCAAGATCCTATGGAAATTTATGTTGATGACGAGGCCAAGTTGACCCTTCATGGTCTTGTACAGCACTACATCAAACTGAGTGAGCTTGAGAAAAATCGCAAGTTGAATGATCTCCTTGATGCATTGGACTTCAATCAAGTTGTTATCTTCGTCAAAAGTGTGAGTAGAGCCGCAGAGCTGAACAAGTTACTTGTGGAGTGCAATTTCCCGTCTATCTGCATCCATTCTGGGATGCCCCAGGAAGAAAGGTTGACACGCTACAAGGGTTTCAAGGAGGGGCATAAAAGGATTCTTGTGGCCACGGATTTGGTTGGTAGGGGAATTGACATTGAGCGTGTCAATATTGTTATAAACTATGACATGCCAGATTCTGCAGACACTTATCTGCACAGGGTTGGTAGAGCTGGAAGATTTGGCACCAAAGGACTTGCAATTACATTTGTTTCATCAGCTTCTGACTCTGATGTTCTTAATCAGGTCCAGGAGAGATTTGAGGTGGATATTAAGGAGCTCCCTGAGCAGATTGATACCTCTACATACAGAGAGAAAAAGGGTGAAGAGAAAAGAAGAACGAAGGAAGAGGAGGGCAGACTGTGCCATCGTAATGAAACTCGGGTGGGCTACACAGAAGCTTCATAG | 1566 | 42.98 | MGETRDNDAYEEELLDYEEEEDKAPDSVTGKVNGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVDSSYLLHFFPTIVLLSFILLFGFLFCGFLSLGLLKVSVLSKNCLGHEVIHYYHTLDFGEVKWFMQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVTGQVAALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALARDKDLALKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMPQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQIDTSTYREKKGEEKRRTKEEEGRLCHRNETRVGYTEAS* | 522 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 4803495 | 4813915 | - | Vvi4g470 | Vvi4g470 | 785249 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi4g470 | 521 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 343 | 488 | IPR001650 | - | |
Vvi4g470 | 521 | SMART | ultradead3 | 129 | 331 | IPR014001 | - | |
Vvi4g470 | 521 | SMART | helicmild6 | 367 | 448 | IPR001650 | - | |
Vvi4g470 | 521 | MobiDBLite | consensus disorder prediction | 484 | 521 | - | - | |
Vvi4g470 | 521 | Pfam | DEAD/DEAH box helicase | 137 | 301 | IPR011545 | GO:0003676|GO:0005524 | |
Vvi4g470 | 521 | Gene3D | - | 324 | 492 | IPR027417 | - | |
Vvi4g470 | 521 | Pfam | Helicase conserved C-terminal domain | 341 | 448 | IPR001650 | - | |
Vvi4g470 | 521 | CDD | SF2_C_DEAD | 328 | 457 | - | - | |
Vvi4g470 | 521 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 142 | 315 | IPR014001 | - | |
Vvi4g470 | 521 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 47 | 75 | IPR014014 | GO:0003724 | |
Vvi4g470 | 521 | CDD | DEADc_DDX39 | 46 | 317 | - | - | |
Vvi4g470 | 521 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE ISOFORM X1 | 28 | 487 | - | - | |
Vvi4g470 | 521 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 28 | 487 | - | - | |
Vvi4g470 | 521 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 180 | 465 | IPR027417 | - | |
Vvi4g470 | 521 | Gene3D | - | 43 | 323 | IPR027417 | - | |
Vvi4g470 | 521 | MobiDBLite | consensus disorder prediction | 484 | 513 | - | - |
Event-related genes

Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi4g470 | K12812 | - | vvi:100250852 | 695.656 |