Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g472 ATGTTCATAACTTTATTTTTAATCATTATATATCATCAGAAAACTCTCTGCAATTTCACAGAAATTTGCCACTTTCAGATCATCCCAACTAAAAAGGTTTTGATAACCATGTCCATGGTTGCAGAAGAGCCAGGCGTCATTCAAATCTTCTCTGATGGTTCAGTAAAACGCCCTGAACGTGAAACCTCCCCTGCCTCAGAAGATTCATCATCCACAGGATACAAGTCCAAGGATGTGATAATTGACTCAACAAAACCAATTTCTGGGAGGATTTTTGTCCCTGATACTCCGGCTTCCTCTAGCCTCCTGCCAGTTCTAGTTTACTTCCATGGCGGCGGTTTCTGCATCGGCACAGCCACATGGCTTGGCTACCACACTTTCCTTGGAGACTTTGCCGTGGCCGCCCAATCAATAGTCCTCTCTGTGGACTACCGCCTTGCTCCTGAACACAGGCTCCCTACAGCTTATGATGATTTTTTGGCAATGTCCATAGTTGCAGAAGTGCCGAGTTTCCTTCAAGTCCTTTCCAATGGTTTAGTAAAACGCTTTGAACCTGAAATCTCCCCTGTCTCAAATGAGTCATCATCCCATGGATACAAGTCCAAGGATGTGATGATTGACTCAACCAAGTCAATCTCTGGCAGAATGTTTCTGCCTGATACTCCAGGCTCCTCTAGCCACCTTCCTGTTCTAGTTTACTTCCATGGTGGTGGCTTCTGCATTGGCTCAACCACATGGCTTGGGTACCATACTTTCCTTGGGGATTTAGCAGTTGCCTCACAAACTATAGTTCTTTCTGTGGACTACCGCCTTGCGCCTGAAAACAGGCTCCCTATAGCTTATGATGATTGTTATAGTTCACTTGAGTGGCTAAGTAACCAAGTCAGCTCTGAACCATGGCTTGAGAGAGCCGACCTCTCTCGTGTGTTTCTCTCAGGGGATAGTGCTGGAGGGAACATTGCTCACAATGTTGCTCTCAAAGTAATTCAGGAAAAAACTTATGATCATGTAAAGATTAGAGGATTGTTGCCCGTACATCCTTATTTTGGGAGTGAGGAGAGGACTGAGAAGGAGAGGGAAGGTGAAGCAGCTGGATATGTTGCGATGAACGATTTGTTATGGAAACTAAGCTTGCCCCAAGGATCAAACCGGGACTATTCTGGGTGTAACTTTGAAAGGGCTGCAATTTCCAGTGCTGAATGGGGTCGTTTTCCAGCAGTGGTAGTATATGTGGCTGGTTTGGATTTCTTGAAAGAAAGGGGAGTTATGTATGCAGGTTTTTTGGAGAAGAAAGGGGTGGAGGTGAAGCTGGTGGAAGCTGAAGATCAGTCACATGTGTATCATGTGTACCATCCTCAATCTGAGGCTACCCATCTTCTTCAAAAGCAAATGAGGCCACCCACTTCTGAAGTTGCCCTCCAGCCGAGAGAATTCCCCTTTTCTGAAGTTGCCCTCCGGCCGAGAGAATTCCTAAAAAAGACCTATTTTCCTCTGCCACTCTCAATCCTCGCAGATTTTGTATCCTGTGCGCGGGCTGGACTGGTAGGAAATATCGGGAAATTTTCCGAAAAATCGGTAAAAATACCGAAATTTCGGCGATATTTTCGGCGATTTTTTGAAATTCTCCCCCGGTTGCTCCGCGCGTCAGATCCACTCGCGAATTTATCGGTGCTTCACGGATATTTCGCTTCGGTGCCGCCCGATATCCGATATTTCCCCGATTTTTCAATCCTTGCTCATGACCAACTTCAAATTCCAGGTTACCTCCAACTCCTTTCTGATGGCTCCGTTAAACGACTTCAACAGCAAACTTCCCCTGCCTCCAATGGTTCATCATCCAATGGATATAAGTCCAAGGATGTGATCATTAACTCAACAAAGCCTACATCTGCAAGGATCTTTCTGCCTGATATTCTGGGCTCCTCTAGCCTCCTTCCAGTTATAGTTTACTTCCATGGTGGAGGTTTCTGCGTAGGCTCAACCACATGGCTTGGGTACCATACTTTCCTTGGAGACCTTGCGGTGGCATCCCAATCAATAGTTCTTTCGGTGGACTACCGCCTTGCACCCGAAAACAGGCTCCCTATAGCTTATGATGATTGTTATAGTTCACTTGAGTGGCTAAGTCGCCAAGTGAGCTCTGAACCATGGCTTGAGAGAGCTGACCTCTCTCGAGTGTTTCTCTCAGGGGACAGTGCTGGAGGAAACATCGTTCACAATGTTGCTCTCAGAACAATTCAGGAACAATCTTGTGATCAAGTAAAGATTAAAGGGTTGTTGATAATACATCCCTTTTTTGGGAGCGAGGAGAGGACCGAGAAGGAGAGGGCCAGCGGAGGAGAAGCTGAGGTTTTGACATGGCTTGACTTGTTTTGGAAACTAAGCTTGCCAGAAGGGTCAAACTGCGACTATTCTGGGTGTAACTTTGCGATGGCAGAATTGTCCAGGGCTGAATGGTCTCGGTTTCCACCAGCTGTGGTTTATGTGGCTGGTTTGGATTTCTCAAAAGAAAGGCAAGTCACGTATGCGGCCTTTCTGGAGAAGAAGGGGGTGGAGGTGAAGCTGGTGGAATCTGAAGGAGAAATTCATGCGTATCATATGCTCCATCCTGAATCTGAGGCGACTCGTTTGCTTCAAAAGCAAATGACTAAAGGGTATTCATTACAACTGGATACGATAGTAAAATTGTATTGCATAATTGTAAAGAATGTTCATATATACACCTCCATACATGACCACATTTCCATATATAGAATACATATCTATTATTTTGACGCAATTTATTCATATTCATACTCAAAACCAATGTCCTTAATTGCAGATTTTCCAGGTTACTTCCAAGTTTTTTCTGATGGTTCGGTAAAACGTTATGAACGTGAAACCGCCCCTGCCTCCATTGATTCATCATCCAATGGATATAAGTCCAAGGATGTAATCATTAGCTCAACCAAGCCAATATCTGCACGGATATTTCTGCCTGATACTCTGGACTCCTCCAGCCACCTTCCAGTTCTAGTTTACTTCCATGGTGGTGGTTTCTGTGCAGTCTCAACCACATGGCTTGGGCACCATACTTTCCTTGGAGACTTTGCGGTGGCATCCCAATCGATAGTTCTTTCTGTGGACTACCGCCTTGCACCTGAAAACAGGCTCCCTATAGCTTATGATGATTGTTATAGTTCACTTGAGTGGCTAAGTTGCCAAGCGAGCTCTGATCCATGGCTTGAGAGAGCTGACCTCTCTCGCGTGTTTCTCTCAGGGGACAGTTCTGGAGGAAACATTGTTCACAATGTTGCTCTCAGAACAATTCAGGAACAATCTTGTGATCAAGTCAAGATTAAAGGGTTGTTGCCAATACATCCTTTTTTTGGGAGCCAGGAGAGGACTGAGAAGGAGAGGGCCAGCGGAGAAGCTGAGAATGTGGCAAAGACTGACTTGCTGTGGAAACTAAGCTTACCAGAAGGGTCAAACCGTGACCATCCTTGGTGTAACTTTGAGAAGGCCGAATTGTCCAGGGCTGAATGGTCTAGGTATCCACCAGTTGTGGTTTATGTGGCTGGTTCAGATTTCTTAAAAGAAAGGGGAGTTATGTATGCAGCCTTTCTGGAGAAGAAGGGAGTGGAGGTGAAACTGGTGGAAGCTGAAGGAGAGGTTCATGTGTATCATGTGCTGCATCCCGAATCCAAGGCTACTCGTTTGCTTCAGAAGCAAATGAGTGAGTTCATTCATAACTTTTAG 3738 45.45 MFITLFLIIIYHQKTLCNFTEICHFQIIPTKKVLITMSMVAEEPGVIQIFSDGSVKRPERETSPASEDSSSTGYKSKDVIIDSTKPISGRIFVPDTPASSSLLPVLVYFHGGGFCIGTATWLGYHTFLGDFAVAAQSIVLSVDYRLAPEHRLPTAYDDFLAMSIVAEVPSFLQVLSNGLVKRFEPEISPVSNESSSHGYKSKDVMIDSTKSISGRMFLPDTPGSSSHLPVLVYFHGGGFCIGSTTWLGYHTFLGDLAVASQTIVLSVDYRLAPENRLPIAYDDCYSSLEWLSNQVSSEPWLERADLSRVFLSGDSAGGNIAHNVALKVIQEKTYDHVKIRGLLPVHPYFGSEERTEKEREGEAAGYVAMNDLLWKLSLPQGSNRDYSGCNFERAAISSAEWGRFPAVVVYVAGLDFLKERGVMYAGFLEKKGVEVKLVEAEDQSHVYHVYHPQSEATHLLQKQMRPPTSEVALQPREFPFSEVALRPREFLKKTYFPLPLSILADFVSCARAGLVGNIGKFSEKSVKIPKFRRYFRRFFEILPRLLRASDPLANLSVLHGYFASVPPDIRYFPDFSILAHDQLQIPGYLQLLSDGSVKRLQQQTSPASNGSSSNGYKSKDVIINSTKPTSARIFLPDILGSSSLLPVIVYFHGGGFCVGSTTWLGYHTFLGDLAVASQSIVLSVDYRLAPENRLPIAYDDCYSSLEWLSRQVSSEPWLERADLSRVFLSGDSAGGNIVHNVALRTIQEQSCDQVKIKGLLIIHPFFGSEERTEKERASGGEAEVLTWLDLFWKLSLPEGSNCDYSGCNFAMAELSRAEWSRFPPAVVYVAGLDFSKERQVTYAAFLEKKGVEVKLVESEGEIHAYHMLHPESEATRLLQKQMTKGYSLQLDTIVKLYCIIVKNVHIYTSIHDHISIYRIHIYYFDAIYSYSYSKPMSLIADFPGYFQVFSDGSVKRYERETAPASIDSSSNGYKSKDVIISSTKPISARIFLPDTLDSSSHLPVLVYFHGGGFCAVSTTWLGHHTFLGDFAVASQSIVLSVDYRLAPENRLPIAYDDCYSSLEWLSCQASSDPWLERADLSRVFLSGDSSGGNIVHNVALRTIQEQSCDQVKIKGLLPIHPFFGSQERTEKERASGEAENVAKTDLLWKLSLPEGSNRDHPWCNFEKAELSRAEWSRYPPVVVYVAGSDFLKERGVMYAAFLEKKGVEVKLVEAEGEVHVYHVLHPESKATRLLQKQMSEFIHNF* 1246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4818333 4838381 - Vvi4g472 Vvi4g472 785251

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g472 1245 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative serine active site. 726 738 IPR033140 -
Vvi4g472 1245 Pfam alpha/beta hydrolase fold 106 162 IPR013094 GO:0016787
Vvi4g472 1245 Pfam alpha/beta hydrolase fold 648 867 IPR013094 GO:0016787
Vvi4g472 1245 Pfam alpha/beta hydrolase fold 231 448 IPR013094 GO:0016787
Vvi4g472 1245 Pfam alpha/beta hydrolase fold 1005 1222 IPR013094 GO:0016787
Vvi4g472 1245 PANTHER ARYLACETAMIDE DEACETYLASE 938 1242 - -
Vvi4g472 1245 PANTHER ARYLACETAMIDE DEACETYLASE 40 166 - -
Vvi4g472 1245 PANTHER ARYLACETAMIDE DEACETYLASE 586 882 - -
Vvi4g472 1245 PANTHER ARYLACETAMIDE DEACETYLASE 163 463 - -
Vvi4g472 1245 SUPERFAMILY alpha/beta-Hydrolases 194 461 IPR029058 -
Vvi4g472 1245 MobiDBLite consensus disorder prediction 55 74 - -
Vvi4g472 1245 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative serine active site. 1083 1095 IPR033140 -
Vvi4g472 1245 PANTHER CARBOXYLESTERASE 13-RELATED 938 1242 - -
Vvi4g472 1245 PANTHER CARBOXYLESTERASE 13-RELATED 586 882 - -
Vvi4g472 1245 PANTHER CARBOXYLESTERASE 13-RELATED 40 166 - -
Vvi4g472 1245 PANTHER CARBOXYLESTERASE 13-RELATED 163 463 - -
Vvi4g472 1245 SUPERFAMILY alpha/beta-Hydrolases 38 161 IPR029058 -
Vvi4g472 1245 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative serine active site. 309 321 IPR033140 -
Vvi4g472 1245 SUPERFAMILY alpha/beta-Hydrolases 938 1243 IPR029058 -
Vvi4g472 1245 Gene3D alpha/beta hydrolase 582 884 IPR029058 -
Vvi4g472 1245 Gene3D alpha/beta hydrolase 945 1243 IPR029058 -
Vvi4g472 1245 Gene3D alpha/beta hydrolase 173 465 IPR029058 -
Vvi4g472 1245 Gene3D alpha/beta hydrolase 24 163 IPR029058 -
Vvi4g472 1245 SUPERFAMILY alpha/beta-Hydrolases 625 910 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g472 - - - vvi:100245713 630.557
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g472 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe02g00336 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013730 1 1 0 2 1 1 1 1 1 0 1 1 1 0 0 0 1 0 0 1 0 1 1 1 1 1 1 1 1 3 25