Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g478 ATGGTGTCTGCTACTAAGAAGTTCAGGGGTGTCAGGCAGCGTCAGTGGGGCTCTTGGGTGTCAGAAATCCGCCACCCTTTACTGAAGAGGAGGGTGTGGCTAGGGACATTCGAGAGCGCTGAGGCAGCCGCGAGAGCATATGATCAGGCCGCCATACTGATGAATGGACAGAACGCAAAGACCAATTTTCCGGTTGCGCTGTCTGAAATCCTTACCACCAAGCTGAGGAAGTGCTGCAAGGACCCTTCTCCTTCCCTCACTTGCTTGAGGCTCGACACTGATAATTCTCATCTGGGGGTATGGCAGAAGCGCGCTGGGACACGCTCAGGGTCCAGCTGGGTGATGAGAGTTGAGCTTGGGAAGAAGGATGGTCAAGTTTCTGATGAAAATTCTTCGTCCTTTTTACGGTCACCGAGGGGCGGAGCTGAAGCCGGGGATGGTTGTTCTTTTATGACTGAAATAAACCTCAACCCAAGGCACATGGTTTCTCTGATTATGTGGTTGGTTCTAAAAAATTATGGTAATTAA 528 50.76 MVSATKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFESAEAAARAYDQAAILMNGQNAKTNFPVALSEILTTKLRKCCKDPSPSLTCLRLDTDNSHLGVWQKRAGTRSGSSWVMRVELGKKDGQVSDENSSSFLRSPRGGAEAGDGCSFMTEINLNPRHMVSLIMWLVLKNYGN* 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4888329 4892373 - Vvi4g478 Vvi4g478 785257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g478 175 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Vvi4g478 175 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Vvi4g478 175 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 67 133 - -
Vvi4g478 175 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 65 - -
Vvi4g478 175 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Vvi4g478 175 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Vvi4g478 175 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Vvi4g478 175 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 65 - -
Vvi4g478 175 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 67 133 - -
Vvi4g478 175 MobiDBLite consensus disorder prediction 124 144 - -
Vvi4g478 175 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Vvi4g478 175 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Vvi4g478 175 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g478 Vvi11g472 ECH
Vvi4g478 Vvi11g231 ECH
Vvi4g478 Vvi9g536 ECH
Vvi4g478 Vvi9g222 ECH
Vvi4g478 Vvi9g706 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14755 PF00847 AP2 3.20E-12 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g478 - - vvi:100259484 278.1