Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g479 ATGGTACTGTGCAGGCCTGAGGTTATTGGTTCCAAACTCTATGCAACAGTGGATCTTGAAAAGGCGAGGGTGGCGCGGACCAGGCTGATAGAAAATCGAGCATATTCCAAGCCCCGGTGGTTCGAGTCCTTTCGAATATACTGTGCCCACCGGATTTCCAACATCATATTCACAATCAAAGAAGATAATCCTGTTGGAGCAAGACTGATTGGAAGAGCCTATGTTCCTGTTGAGGCAATCAAATCCGGGCATGAAGTGGATCTGCAGGTGGAGATATTGGATGAAGACAGAAATCCTTTACCAGGCCATTCTAGAATCCATGTGAAGTTGCACTTTTTCCATGCCAAGAAACAGAGCGATTGGTCAAAAGGAATTCTCAATCCTGAGTTGGGGGAAGTCCCGTGCACATTCTTCATGCAGAGGCAGGGAAGGTTTCATGAATACCACAGGTGCTGGGAGGACATTTTTTATGCTATATACCGTGCCCAACACTTGATATACATAACTGGATGGTCTGTGTATACTAAGATCACCTTGGTAAGGGACTCAATGGAGCCAAAGCCAGCTCAAATTATGATGACACTTGGGGAATTGCTCAAACTGAAGGCGGATCAAGGTGTGAGAGTCCTTATGCTTATTTGGGACGACAGAACTTCAGTTGAGGCGCTAAAGAAGGATGGCTTGATGGAAACCCATGATCAAGAAACTGCGGATTACTTCCGGGACACAAAGGTGCGTTGTGTTCTGTGCCCCCGTTATTCTGACAGGGGACGAAGTACAGTTCAGGGATTTGAAACTTCTACTATGTTTACTCATCATCAGAAAACAGTTGTGGTAGACAGCGAAATGGCTGATATAGGGTACGAGAAGAGGAGGATTGTGAGTTTTGTTGGTGGCATTGATCTTTGTGGTGGGCGATATGACACACAAGAACATCCCCTGTTCAGGACTTTGGGCACAATCCATCATGATGATTTCCATCAGCCCAATTTCCCGGGAGCTTCCATCACCAAAGGTGGACCAAGGGAGCCCTGGCATGATATTCATTGCAGGCTAGAAGGCGCTGTTGCTTGGGATGTCTTGTATAACTTTGAGCAGAGGTGGAGGAAGCAAGTCGGAGAAGATGGTCTTTTTCCACTGAGCAAGCTTGAACAAATCACAGTCCGCCCATCCCCAGTTACCACACTGGAAGACCCTGAAACATGGAATGTTCAGCTATTCAGATCCATTGATGGCGGGGCTGCTGCTTTTCCCTTCCCTGAAAAGCCCCGAGAGGCAGCAGATCGTGGCCTTATTACTGCAAAGAATAGTCTCATCGACAGAAGCATTCAGGATGCTTATATCAACGCCATTCGACGGGCAAGGCATTTCATTTACATAGAGAATCAGTATTTCATTGGAAGCTCCTTTGACTGGGCTGCAAAAGACATCAAGGTTGAAGATATAAATGCATTGAATCTCATACCCAAGGAGCTCTCACTAAAGATTGTCAGCAAGATTGAGGCAGGGGAGAGGTTCACTGTTTACATTGTAATCCCACTGTGGCCAGAAGGCATACCCGAGAGCGCTTCCGTTCAGGCAATATTAGATTGGCAGAGGAGAACAATGGAAATGATGTATACTGATATTGTCCAAGCTCTTCAAGCCAGGGGAATCCACGCAAACCCGAGGGACTATTTAACATTCTTCTGCCTTGGCAACCGTGAGCTGATCAATGCCGATGAATATAAGCCTAAAGAGAAACCAGCAGAGGGTAGTGATTACATGAGAGCTCAGCAGTCTCGGCGTTTCATGATCTATGTTCATTCAAAGATGATGATAGTGGACGATGAGTACATAATCATTGGGTCGGCCAACATCAACCAGAGGTCAATGGATGGTGGGAGAGACACAGAGATAGCCATGGGAGGGTACCAGCCACATCATTTAGCAGCAACCGAGGAGGGGGGGAGGGGTGCGATCCATGGTTTTCGATTGGCGTTATGGTATGAGCACCTTGGTGGGCACGATGCCTCCTTCCTCCATCCAGAAAGCGTGGAATGTGTGAGAGTAGTAAACGAGTCTGCTGAGAGGAACTGGAGAGCGTATTCAAGTGACACGCTGGTGGCAGATCTTCCAGGGCATTTGCTCAGTTACCCAGTCCAAGTCAACCAGAATGGCACCGTCACTGCGCTGCCGGAGACTGAGTTCTTTCCTGACACCAAGGCTCGTGTCCTTGGCACCGTATCTGAGTTCCTTCCACCCATCCTTACCACCTAG 2259 47.72 MVLCRPEVIGSKLYATVDLEKARVARTRLIENRAYSKPRWFESFRIYCAHRISNIIFTIKEDNPVGARLIGRAYVPVEAIKSGHEVDLQVEILDEDRNPLPGHSRIHVKLHFFHAKKQSDWSKGILNPELGEVPCTFFMQRQGRFHEYHRCWEDIFYAIYRAQHLIYITGWSVYTKITLVRDSMEPKPAQIMMTLGELLKLKADQGVRVLMLIWDDRTSVEALKKDGLMETHDQETADYFRDTKVRCVLCPRYSDRGRSTVQGFETSTMFTHHQKTVVVDSEMADIGYEKRRIVSFVGGIDLCGGRYDTQEHPLFRTLGTIHHDDFHQPNFPGASITKGGPREPWHDIHCRLEGAVAWDVLYNFEQRWRKQVGEDGLFPLSKLEQITVRPSPVTTLEDPETWNVQLFRSIDGGAAAFPFPEKPREAADRGLITAKNSLIDRSIQDAYINAIRRARHFIYIENQYFIGSSFDWAAKDIKVEDINALNLIPKELSLKIVSKIEAGERFTVYIVIPLWPEGIPESASVQAILDWQRRTMEMMYTDIVQALQARGIHANPRDYLTFFCLGNRELINADEYKPKEKPAEGSDYMRAQQSRRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDTEIAMGGYQPHHLAATEEGGRGAIHGFRLALWYEHLGGHDASFLHPESVECVRVVNESAERNWRAYSSDTLVADLPGHLLSYPVQVNQNGTVTALPETEFFPDTKARVLGTVSEFLPPILTT* 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4893676 4897069 + Vvi4g479 Vvi4g479 785258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g479 752 Pfam Phospholipase D Active site motif 268 306 IPR001736 GO:0003824
Vvi4g479 752 Pfam Phospholipase D Active site motif 598 624 IPR001736 GO:0003824
Vvi4g479 752 Pfam Phospholipase D C terminal 671 741 IPR024632 -
Vvi4g479 752 CDD C2_plant_PLD 4 113 - -
Vvi4g479 752 Gene3D Endonuclease Chain A 136 391 - -
Vvi4g479 752 PIRSF PLD_plant 2 146 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vvi4g479 752 PIRSF PLD_plant 141 752 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vvi4g479 752 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 597 624 IPR001736 GO:0003824
Vvi4g479 752 PANTHER PHOSPHOLIPASE D ALPHA 3 145 752 - -
Vvi4g479 752 PANTHER PHOSPHOLIPASE D ALPHA 3 2 143 - -
Vvi4g479 752 Pfam C2 domain 11 88 IPR000008 -
Vvi4g479 752 Gene3D Endonuclease Chain A 412 647 - -
Vvi4g479 752 Gene3D C2 domain 9 126 IPR035892 -
Vvi4g479 752 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 11 113 IPR035892 -
Vvi4g479 752 ProSiteProfiles C2 domain profile. 1 90 IPR000008 -
Vvi4g479 752 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 268 306 IPR001736 GO:0003824
Vvi4g479 752 SMART pld_4 597 624 IPR001736 GO:0003824
Vvi4g479 752 SMART pld_4 268 306 IPR001736 GO:0003824
Vvi4g479 752 SUPERFAMILY Phospholipase D/nuclease 441 681 - -
Vvi4g479 752 PANTHER PHOSPHOLIPASE D 2 143 IPR015679 -
Vvi4g479 752 PANTHER PHOSPHOLIPASE D 145 752 IPR015679 -
Vvi4g479 752 SUPERFAMILY Phospholipase D/nuclease 136 378 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g479 Vvi9g538 ECH
Vvi4g479 Vvi11g475 ECH
Vvi4g479 Vvi9g537 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g479 K01115 - vvi:100257647 1530.77