Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g48 ATGAAGAGAGGGAAAGACGAGGAAAAGATCATGGGGCCTATGTTCCCAAGGCTTCATGTTAATGATACAGAGAAAGGAGGGCCAAGAGCACCTCCAAGAAACAAGATGGCTCTCTATGAACAGCTTAGTGTACCATCTCAGAGGTGCAATCCTGGTGTCATGCCTCTCAAGTCTAACAACGCTAGCAACTTGGTGCCTCCGGCGTCATCGAGTCAGGGAAGTGGCCATGAAAGAGGTGTGTTTTTTCCGCATCACATATCTCCCTCAACTCCAACTCATCTACCAGAGAAGCTTCATGCTCGCCATTCTGATGCAGTGATTTTGAACACTCCATTGGCTCAATTTGAGCAGAGAAAGAAGCAAGGAGATGAAGATGATTTTAGAGTTCCTATATTTGTTCACTCAGGGACAGAATTTCATGGTAGAAACCAGAACAGCATAGATAGGGAAATACTTACTCCCAGCAGCTCAACTTGTTTGGACAAGAGGAGCCAGGGTGATGTGAATCGGAAAGATTATGTGTCAAGTAGGGAGTACTCAGAAAAATCTGCCTCAAATCTGTCAACTAAAGAAAAAATTGATGAATCTATGAAGCAAGTCAATAAACCTTCAAGTGAAGATTTTCGGGATCAATCATCAGCTAATTTTAGCAGCTTACATGATACTGATGATGCATGGAACGCTTCTAGGGTAAGAAGTAGTTCATATTCAGGAGATGGTCTTGGTAGTCCTAGTGAACCAGATAATGACGGTGCATGTCGTGGAGACAAGACATGTGGTACATTACAAAAGGGAAATGTAGACACAAATGATGACTTATCTGAGACCTCCATGGTGGATTCTATGTCAGGCTTGGATATAACACCTGATGATGTGGTAGGAATAATAGGTCAGAAACATTTTTGGAAAGCGAGAAGAGCAATTGTCAATCAACAAAGAGTATTTGCTGTACAAGTGTTCGAGTTGCACAGACTGATAAAAGTTCAGAGATTAATTGCTGGATCACCACATCTTATGGTCGATGAGAGTGCTTATTTGGGCAAACCATCTTTAAAGAGCTCTCCTGCAAAGAAACTACCATTGGAATATGTTGTAAAACCACCGCCAAATATGGTCATGCACAAAGATGATTATGAGAGGGCAAGCCATCAATTGGAATGTTCTGCGGAAAATGCAGTTGGGAAGACACATCTTCCATCTGTGAAAAATGGTAATCCACCTTCAAATTATGGGCCTTATATAGGAAATCCACCACCAGCACCTGCGCCCACTGATAGCAAAATGGGTCCTTGGTGTTACCCTCAACCTCCTGGGCATCAATGGTTGGTTCCTGTAATGAGCCCTTCTGAAGGACTTGTGTACAAGCCGTATCCTGGCCCTGGATTCATGAGCACAGTTTGTGGAGGATGTGGACCAATGGGGTCAGCTCCCATGACAGGTAGCTTCATCAATCCAGCATATGGGGTTCCATCATCTCATCATCATCAAGGAATCGGTGTTCATCCTGGTACTCCTCCCATTGGTCATGGTTATTTTCCCCCATATGGCATGTCAGTGATGAACCACCCAACCATCTCAGGTTCAGCTGTTGAACAAATGAATCGGTTTGCTGGACATGGTTCACTCAGTCAAAGTGGTCAGTTATCAGGTGGAGGAGCCAGCTTTAACATGCAACATCAGAACTCATGTAATGTGCCAACCCCAAAGAGAGCTATTCCACAAGGTGTGAAGTTTCCAATGTCGAAGGACAGTGAGTTCCAAGGAAGCACAGCCAGTAGTCCAAGTGAGAGAGAGCAACAAGTTGGGACAGGTGACACTGCTGAAGGAAGAGACCCGCTTCCTCTTTTTCCTATGGCTCCTGCTGCCATTCCAGCAGGAGATCCCCAGCCTAATGGTACTGATCAGCCAACACGAGTGATCAGAGTTGTACCTCACAACCCTAGATCTGCAACAGAGTCAGCTGCTAGAATTTTCCAGTCCATACAAGACGAGAGAAAACAGTTGGACTCTACTTAG 2016 44.64 MKRGKDEEKIMGPMFPRLHVNDTEKGGPRAPPRNKMALYEQLSVPSQRCNPGVMPLKSNNASNLVPPASSSQGSGHERGVFFPHHISPSTPTHLPEKLHARHSDAVILNTPLAQFEQRKKQGDEDDFRVPIFVHSGTEFHGRNQNSIDREILTPSSSTCLDKRSQGDVNRKDYVSSREYSEKSASNLSTKEKIDESMKQVNKPSSEDFRDQSSANFSSLHDTDDAWNASRVRSSSYSGDGLGSPSEPDNDGACRGDKTCGTLQKGNVDTNDDLSETSMVDSMSGLDITPDDVVGIIGQKHFWKARRAIVNQQRVFAVQVFELHRLIKVQRLIAGSPHLMVDESAYLGKPSLKSSPAKKLPLEYVVKPPPNMVMHKDDYERASHQLECSAENAVGKTHLPSVKNGNPPSNYGPYIGNPPPAPAPTDSKMGPWCYPQPPGHQWLVPVMSPSEGLVYKPYPGPGFMSTVCGGCGPMGSAPMTGSFINPAYGVPSSHHHQGIGVHPGTPPIGHGYFPPYGMSVMNHPTISGSAVEQMNRFAGHGSLSQSGQLSGGGASFNMQHQNSCNVPTPKRAIPQGVKFPMSKDSEFQGSTASSPSEREQQVGTGDTAEGRDPLPLFPMAPAAIPAGDPQPNGTDQPTRVIRVVPHNPRSATESAARIFQSIQDERKQLDST* 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 595338 601589 + Vvi4g48 Vvi4g48 784827

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g48 671 MobiDBLite consensus disorder prediction 540 568 - -
Vvi4g48 671 PANTHER PROTEIN EARLY FLOWERING 3 1 669 IPR039319 GO:2000028
Vvi4g48 671 MobiDBLite consensus disorder prediction 138 272 - -
Vvi4g48 671 MobiDBLite consensus disorder prediction 206 242 - -
Vvi4g48 671 MobiDBLite consensus disorder prediction 48 75 - -
Vvi4g48 671 MobiDBLite consensus disorder prediction 138 163 - -
Vvi4g48 671 MobiDBLite consensus disorder prediction 164 205 - -
Vvi4g48 671 MobiDBLite consensus disorder prediction 1 33 - -
Vvi4g48 671 MobiDBLite consensus disorder prediction 583 602 - -
Vvi4g48 671 MobiDBLite consensus disorder prediction 540 638 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g48 K12125 ELF3; protein EARLY FLOWERING 3 - vvi:100255961 1292.72
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g48 Vvi9g217 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g48 . . Bda01g00608 Bda03g00152 Bpe02g01532 Bpe02g00476 . . Cmo05g00115 Cmo12g00565 . Cma05g00109 . Car12g00573 Sed08g1747 Cpe07g00546 . Bhi04g00485 Tan02g1661 Cmetu03g0883 . Hepe08g1374 . Lcy13g2170 . . . . . . . . . Cone17ag0912 Cone20ag0255 . . . . Blo17g00297 Blo18g00293 Bda01g01321 Bda13g01613 Bpe14g00253 . Bma01g00931 . . . . . . . Car05g00094 Cpe11g00089 . . . . . . . . . . . . . . . Lsi08g01566 Csa02g01855 Chy03g01629 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005519 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 2 1 1 1 1 40