Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g483 ATGACCACCACTTTGCTGTTTGTGATGGATGTGGATGATCTTTTACCTGTTAATGGGCTTGAGGAGGGCCATCAAAATGGAATTCATGAGCAACTTTCTGCTGCTGGAGGGGAAGGTGTTATTCCAGAGAAAGTGAATGGGAATCTTGATCTTAGCACAGAGAGTGCAGGGATGAATGGAAATGCAGAAAATGTTGGCATGTGGGATGACAATGGAATCATTAACGCTTCTACTGCAGAAGTTGGAGAGGGATCACATATCCGTGCAAGAGTCAATGGATTGACCATTTCTGAGGATTTGGAAGTGGAAGATGCTGATCCATCAAAGCATTCCAAACCACAGAAAGGTCAAGGGAAGAGCAGTAAAGAGAAACTTTCGAGCCCCAAACATGCAGGGACTACTTGGGTGAAGAAGAAAGATGGGAAAGATGAAATTGTGACTTCTGCTAGTACCAATGGTTCTCTTGCCTCTATTTCACGCCCAAAACAAACTCTCAAAAGTAGATCGTTCAGTGATAAGCAGGACCATCTATCCAAGCAATCTAAAAACTCTGAGGCAGCATCTTCTACCTCAAATATGATACAGCCTGAAGGCCGTGCGGAAAAGACAAGACTGAAGCCTGTGAAACTGGGAGCCCCTACTGTGTCTGATGTGAACACAAAATCTCCGAGTCCCACAGAAGATACAAAACCTCGTAGAGTTGCTGCACTTCCATCCTACAATTTCAGCTTTAGGTGTGATGAACGAGCTGAGAAAAGAAGAGAGTTCTATACTAAACTTGAGGAAAAGACTCATGCAAAGGAAATAGAGCGGACTAACTTGCAAGCTAAGTCCAAGGAAACTCAAGAAGCTGAGATTAAGATGCTTAGGAAGAGTTTGACCTTTAAAGCAACGCCCATGCCAAGCTTCTATCAGGAACCCCCACCTCCTAAAGTGGAATTAAAGAAGATACCACCAACAAGAGCCAAATCTCCCAAGCTTGGTCGAAAGAAGAGTTCTCCTGCACCAGAATCTGAGGGAAGCAGTAGCCATCGATCAGGCCGGTTAAGTCTGGATGAGAAAGTGTCCCAGAACAACCCTGCCAAAGGAATTTCCCCTGGCCATCCTAAGAAACCGCTGCGGAAGTCCCTTCCCAAACTGCCTTCTGAAAGGACCAACTTATCCAAATCAACAAATGAAGCTGCATTTCTCAGCCAACAGCAGGAGCCGGTTCAAGTTCCTGATCCTAGCAAATCTCAGCCTGATGCAGATGACAAGTCAGAGGTTGAAGAGCAAGCTCAGCAGACCATGTTTCAGGAACCCAGTGCATTGGAGTGTTAG 1320 45.38 MTTTLLFVMDVDDLLPVNGLEEGHQNGIHEQLSAAGGEGVIPEKVNGNLDLSTESAGMNGNAENVGMWDDNGIINASTAEVGEGSHIRARVNGLTISEDLEVEDADPSKHSKPQKGQGKSSKEKLSSPKHAGTTWVKKKDGKDEIVTSASTNGSLASISRPKQTLKSRSFSDKQDHLSKQSKNSEAASSTSNMIQPEGRAEKTRLKPVKLGAPTVSDVNTKSPSPTEDTKPRRVAALPSYNFSFRCDERAEKRREFYTKLEEKTHAKEIERTNLQAKSKETQEAEIKMLRKSLTFKATPMPSFYQEPPPPKVELKKIPPTRAKSPKLGRKKSSPAPESEGSSSHRSGRLSLDEKVSQNNPAKGISPGHPKKPLRKSLPKLPSERTNLSKSTNEAAFLSQQQEPVQVPDPSKSQPDADDKSEVEEQAQQTMFQEPSALEC* 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4924824 4933011 - Vvi4g483 Vvi4g483 785262

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g483 439 MobiDBLite consensus disorder prediction 181 197 - -
Vvi4g483 439 Coils Coil 437 439 - -
Vvi4g483 439 Pfam Targeting protein for Xklp2 (TPX2) domain 242 312 IPR027329 -
Vvi4g483 439 MobiDBLite consensus disorder prediction 101 234 - -
Vvi4g483 439 MobiDBLite consensus disorder prediction 292 439 - -
Vvi4g483 439 MobiDBLite consensus disorder prediction 425 439 - -
Vvi4g483 439 Coils Coil 257 277 - -
Vvi4g483 439 MobiDBLite consensus disorder prediction 166 180 - -
Vvi4g483 439 MobiDBLite consensus disorder prediction 146 165 - -
Vvi4g483 439 PANTHER PROTEIN WVD2-LIKE 4 9 427 IPR044833 GO:0008017
Vvi4g483 439 MobiDBLite consensus disorder prediction 381 408 - -
Vvi4g483 439 PANTHER PROTEIN WVD2-LIKE 5-RELATED 9 427 - -
Vvi4g483 439 MobiDBLite consensus disorder prediction 102 126 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g483 - - - vvi:100244101 814.298
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g483 Vvi11g483 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g483 . Blo12g01076 Bda01g00746 Bda03g00071 . . Bma04g00068 . . . Cma01g01504 . Car09g00402 . . . Cpe06g00341 . . . . . . . Cla05g01738 Cam05g1851 Cec05g1863 Cco05g1924 Clacu05g1841 Cmu05g1722 Cre05g1854 Cone4ag1784 Cone7ag1699 Cone17ag1020 Cone20ag0671 Lsi04g02130 Csa03g04336 Chy04g00366 . . Blo18g00025 Bda01g01001 . . Bpe04g00056 . . Sed05g1701 Cmo01g01561 Cmo09g00468 Cma09g00459 . . . . Cpe02g00451 Bhi09g02239 Tan01g3647 Cmetu04g2939 . Hepe01g2022 Mch11g0556 . . . . . . . . . . . Cme04g00408
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006493 2 1 1 1 2 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 2 38