Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g484 ATGGCTTCCTATGGCTTTGACCACTCTCTCCTTTGCCCACTCTCCCCATTCTCCTGCTCCGGCAAATTCAAATTTCCCGCCAAAACTCCACTCTCAACTGTCGAATTTTGTGCCAAAGCCTCCAAGTCTTCCTCCGTCGCCACCACCGCCATCGAAGATTCGAATCAACCCTGCTTTGATGTTTCATATGGACGAAGGGAACTTATACTCATAGCCACACTACCATTTCTTCTTCCCGTGCACGAGTCTATGCAGAAATTTGGTGTAAAGGCTGCAGAGTTAGGTACTACTGAATATCTGCTAATGAAAGAGGAGGTAAGGAAGGTTTTGTCGAAGGGCAAGGCTGCTGGTGTACTTCGCCTTGTTTTTCATGATGCTGGGACCTTTGAAATGGATGATAATTCAGGTGGCATGAATGGTTCCATTGTGTATGAACTTGATAGACCAGAAAACACAGGTCTAAAAAAATCTTTGAAGATTCTAGAGAAAGCGAAGAGTGGAGTGGATATGGTACAACCAGTATCATGGGCAGACATGATTGCTGTGGCTGGAGCTGAAGCAGTTTCAGTATGCGGTGGTCCAAAAATCCCAGTTCAGTTAGGCAGATTAGACTCAATGGCACCTGATCCTGAAGGGAAACTTCCTGAAGAATCTTTGGATGCTTCTGCCTTGAAGCAATGCTTTCAAAGAAAAGGCTTAGCAACACAAGAACTTGTTGCATTATCTGGAGCTCATACTCTTGGAGGTAAAGGTTTTGGAAATCCCACTGTTTTTGACAACTCATATTTCAAGATACTTCTGGAGAAGCCATGGAAGTCTTCAGATGGTATGTCAAGTATGATCGGGCTTCCTTCAGACCGTGCACTTGTTGAGGATGATGAATGCTTGAGATGGATCACAAAGTACGCCAACAATCAGAACATGTTTTTCGAAGATTTCAAGAATGCCTACATCAAACTTGTGAATTCTGGTGCAAGGTGGAAGAATTTATGA 993 43.81 MASYGFDHSLLCPLSPFSCSGKFKFPAKTPLSTVEFCAKASKSSSVATTAIEDSNQPCFDVSYGRRELILIATLPFLLPVHESMQKFGVKAAELGTTEYLLMKEEVRKVLSKGKAAGVLRLVFHDAGTFEMDDNSGGMNGSIVYELDRPENTGLKKSLKILEKAKSGVDMVQPVSWADMIAVAGAEAVSVCGGPKIPVQLGRLDSMAPDPEGKLPEESLDASALKQCFQRKGLATQELVALSGAHTLGGKGFGNPTVFDNSYFKILLEKPWKSSDGMSSMIGLPSDRALVEDDECLRWITKYANNQNMFFEDFKNAYIKLVNSGARWKNL* 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4942547 4950572 - Vvi4g484 Vvi4g484 785263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g484 330 Gene3D Peroxidase, domain 2 215 317 - -
Vvi4g484 330 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 18 328 IPR044831 GO:0004601|GO:0034599
Vvi4g484 330 ProSitePatterns Peroxidases active site signature. 115 126 IPR019794 GO:0004601
Vvi4g484 330 ProSiteProfiles Plant heme peroxidase family profile. 115 330 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g484 330 CDD plant_peroxidase_like 115 322 - -
Vvi4g484 330 PRINTS Plant ascorbate peroxidase signature 115 130 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g484 330 PRINTS Plant ascorbate peroxidase signature 133 143 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g484 330 PRINTS Plant ascorbate peroxidase signature 173 191 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g484 330 PRINTS Plant ascorbate peroxidase signature 192 204 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g484 330 PRINTS Plant ascorbate peroxidase signature 213 230 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g484 330 PRINTS Plant ascorbate peroxidase signature 231 252 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g484 330 PRINTS Plant ascorbate peroxidase signature 301 325 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g484 330 PRINTS Haem peroxidase superfamily signature 115 129 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g484 330 PRINTS Haem peroxidase superfamily signature 174 191 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g484 330 PRINTS Haem peroxidase superfamily signature 192 204 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g484 330 PRINTS Haem peroxidase superfamily signature 237 252 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g484 330 Gene3D - 103 324 - -
Vvi4g484 330 SUPERFAMILY Heme-dependent peroxidases 112 326 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi4g484 330 Pfam Peroxidase 103 305 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g484 330 ProSitePatterns Peroxidases proximal heme-ligand signature. 237 247 IPR019793 -
Vvi4g484 330 PANTHER L-ASCORBATE PEROXIDASE 6-RELATED 18 328 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g484 K00434 E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11] - vvi:100247405 650.973
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g484 . . . . . . . . . Cmo12g00288 . . . Car12g00320 . Cpe07g00297 . Bhi04g00949 Tan02g2724 . . Hepe10g0250 . . . . . . . . . . . Cone17ag1019 . . . . Cme03g01615 Blo17g00021 . . Bda13g01263 Bpe14g00580 . . Bma02g00025 . . . . Cma12g00339 . . . . . . . . . . . Cla08g01335 Cam08g1797 Cec08g1376 Cco08g1504 Clacu08g1491 . Cre08g1278 Lsi08g01206 . Chy03g01119 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007203 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 37