Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g485 ATGGTAAGTTTTGGTCTCATTCATTCTATGGGCTCCTCCTTGTGTTTGTTTCTTCTCCTGCTTTCTGAAACTTGTATGGCTAGTGTTCAACGTCACGGGAAGGTTGAACCTGGCTTTGAAGGGTCTCAAATGAATTGGATTGATAATGACGGGCATTTTCTTTTATCAAACAACTCAGATTTTGCTTTTGGATTTGAGGCCACGAATGATGTCCAATTGTTTCTACTAGTTGTTATCCACCTTGCTGCTAAGAAAATAATTTGGACTGCAAATAGAGGGTCCCCAGTTCAGAATTCTGATAAGTTTGTATTTGATGACAAGGGAAGGGTGTTCCTCCAAAAGGGGAATAGGACTGTTTGGTCCCCAGATACTGCTGGCAAAGCTGTTTCTGCAATAGAAATGCAGGACTCAGGAAATTTGGTTTTGGTAGGGAATGAGGGTCAACCAATTTGGCAGAGTTTTGATCATCCTACAGACACTCTTTTATCCTACCAGAATTTTAAAGAGGGAATGAAGCTTGAAAGTGATCTTACCAATGATAATATCAGCTATTATCTCGAAATCAAGTCAGGTAATATGATTCTTTATGCAGGTTACCGAACTCCTCAGCCTTATTGGTCTATGAAGAAGGAAAACCTAAAAATTGTAGAAAAAGATGGAGACCCCGTTTCAGCGTCGATTGAAGGCAATTCTTGGAGATTCTATGATAGAAACAAAGCCTTATTGTGGCAATTTGTTCTCTCACAAAATGGTGATACAAATTCCACTTGGGCTGCGACTTTAGGAAGTGATGGCTTTATCTCTTTCACTACTTTATCAGATGGGGGAATTTCGCAAGTACAGAAACAGATACCAGGGGACTCTTGCAGTTCGCCAGGATTTTGTGAAGCCTATTATATTTGTTCCAGTAACAGGTGCCAGTGCCCTTCAGTTCTTAGCTCCAGGCCTAACTGCAACACGGGGATCGTCTCTCCATGCAAAGATTCCACAGAGCTTGTAAATGCTGGGGATGGATTCAACTATTTTGCAATTGATAACTGCTCATGCCTTGCATCGTTCTTTAAAAACAGTACTGGGAATTGCTTTCTGTTTGACAGTGTAGGAGGTTTGCAGAGCACTGATGGACAGGGTTTTGCTATGTATATTAAAGTCTCAAGTAGTGGAGGTAGTGATGTGAACCCTGGTGGGGACGGGGGTGGAGGCAGCAAGAAACACTTCCCATATGTTGTGATCATAGCTGTTTCTACTGTACTTGTAATTATTGGCTTAGTTTATGTGGGATTTAGATACTCAAGGAGGAAGAAGTCGCCTGAATCTCCTCATGATCATACTTCAGAGGAGGATAATTTCTTGGAGAGTTTGTCTGGGATGCCAATCCGTTTCAAAGGGAAGCTGAGAGATTTACTGGACTCGCGGCTGGAGGTCGATGAAGAAGACGAGAGGGTGTCTACCGCAATTAAAGTTGCAATGTGGTGCATACAGGAAGATATGCATCAGAGGCCATCAATGATGAAAGTAGTCCAAATGCTAGAAGGCCTCTGTGCTGTTCCTCAGCCGCCCACCACTTCCCAAATGGGATCCCGATTTTACTCCGGCTTCTTTAAATCAATCAGCGAAGAGGGGACTTCATCAGGACCATCAGACTGCAATAGTGATGCATACCTCTCTGCCGTGAGGCTTTCAGGACCAAGATAA 1695 42.89 MVSFGLIHSMGSSLCLFLLLLSETCMASVQRHGKVEPGFEGSQMNWIDNDGHFLLSNNSDFAFGFEATNDVQLFLLVVIHLAAKKIIWTANRGSPVQNSDKFVFDDKGRVFLQKGNRTVWSPDTAGKAVSAIEMQDSGNLVLVGNEGQPIWQSFDHPTDTLLSYQNFKEGMKLESDLTNDNISYYLEIKSGNMILYAGYRTPQPYWSMKKENLKIVEKDGDPVSASIEGNSWRFYDRNKALLWQFVLSQNGDTNSTWAATLGSDGFISFTTLSDGGISQVQKQIPGDSCSSPGFCEAYYICSSNRCQCPSVLSSRPNCNTGIVSPCKDSTELVNAGDGFNYFAIDNCSCLASFFKNSTGNCFLFDSVGGLQSTDGQGFAMYIKVSSSGGSDVNPGGDGGGGSKKHFPYVVIIAVSTVLVIIGLVYVGFRYSRRKKSPESPHDHTSEEDNFLESLSGMPIRFKGKLRDLLDSRLEVDEEDERVSTAIKVAMWCIQEDMHQRPSMMKVVQMLEGLCAVPQPPTTSQMGSRFYSGFFKSISEEGTSSGPSDCNSDAYLSAVRLSGPR* 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4952204 4954652 - Vvi4g485 Vvi4g485 785264

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g485 564 Gene3D Transferase(Phosphotransferase) domain 1 433 523 - -
Vvi4g485 564 CDD B_lectin 47 157 IPR001480 -
Vvi4g485 564 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 462 564 - -
Vvi4g485 564 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 14 461 - -
Vvi4g485 564 Gene3D - 45 156 IPR036426 -
Vvi4g485 564 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 14 461 - -
Vvi4g485 564 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 462 564 - -
Vvi4g485 564 ProSiteProfiles Bulb-type lectin domain profile. 39 155 IPR001480 -
Vvi4g485 564 Pfam D-mannose binding lectin 86 168 IPR001480 -
Vvi4g485 564 SUPERFAMILY alpha-D-mannose-specific plant lectins 84 209 IPR036426 -
Vvi4g485 564 SMART blect_4 45 157 IPR001480 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g485 - - - vvi:100242272 904.434
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g485 Vvi9g545 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g485 Blo01g01390 . Bda01g00747 . Bpe02g01248 Bpe02g00561 . . . Cmo12g00289 . . Car09g00401 Car12g00321 . Cpe07g00298 Cpe06g00340 Bhi04g00947 . . . . . Lcy13g1792 Cla05g01737 . . . . . . Cone4ag1783 Cone7ag1698 . . Lsi04g02129 Csa03g04335 Chy04g00367 Cme03g01614 . Blo18g00024 Bda01g01002 Bda13g01262 Bpe14g00581 . Bma01g01276 Bma02g00024 . . Cmo09g00467 Cma09g00458 Cma12g00340 . . . . Bhi09g02238 . . . . Mch11g0555 . Cla08g01336 . . . . . . Lsi08g01207 . Chy03g01118 Cme04g00409
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001479 3 3 3 4 3 2 2 2 2 2 2 2 2 2 1 2 2 7 2 2 2 2 2 2 1 2 1 2 2 2 68