Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g489 ATGGCGCCGAGTAGTATAAGGAAAGCGATTGGGAGCGTCAAGGACCAGACGAGCATTGGAATTGCGAAGATTGCGAGCAATATGGCGCCGGATCTAGAAGTGGCGATTGTGAAGGCAACGAGTCATGACGACGATCCGGCGGCGGAGAAGTATGTGCAAGAAATCTTGAACCTCACGAAGTACTCGCATGGTTACGTGAATGCTTGTGTGGCGGCAGTGTCGAAGAGATTGGGAAAAACTAGGGATTGGGTTGTGGCGCTGAAGGCGCTTGTGCTTGTGCATAGGCTGTTGGCGGAGGGTGACCCGGGGTTTCAGAGGGAGATTTTGTATGCGACACGGAGGGGAACGAGGTTGTTGAATATGTCGGATTTCAGGGACGAGGCCCATTCGAATTCGTGGGATCATTCTGCGTTTGTGAGGACTTTTGCTATGTATCTTGACCAAAGACTTGAATTTATCTTATATGAGAAGAAGAGCAGTAGCGGTGGCAGTGATGGAGGGGATGAGAGGTTTGGGACGAGGGAGGAACCTGTAACCCCATTGAGGGAGATGAAGCCTGAGAGGATTTTCGGGAAGATGGGTCATTTGCAGAGGCTTTTGGATAGGTTCTTGGCGTGTCGGCCAACAGGGTTGGCCAAGAATAATAGGATGGTTTTGATTGCTTTGTATCCTGTTGTTAGGGAGAGTTTTCAGTTGTATGCGGATATCTGTGAGGTTTTAGCAGTTTTGCTGGATCGCTTTTTTGAAATGGAGTACCCAGATTGTAGGATCACTGATAAGTTGTTGGAGACCTTGGAGGAGTTTGTGAGGGACAGAGCTAAGGGACCAAAGAGTCCAGAGAGGAACGAGGAACCACAGCCCGTGGCTCGAGAGGAGGAGCCAGTGCCAGATATGAATGAAATAAAGGCGCTTCCTCCACCAGAGAATTACACTCCTCCACCTCCACCCCCACCTGAGCCAGAACCTAAACCACAGCAACCGCAAGTGACAGAAGACTTGGTGAATTTGAGGGATGAAGGGGTGACTGCAGATGATCAAGGAAATAGGTTTGCTCTGGCGCTGTTTGCTGGTCCAGGGGCAAACAACACAAATGGGTCATGGGAAGCATTCCCGTCAAATGGGCAACCCGAGGTGACCTCTGCTTGGCAGACACCAGCTGCTGAAACTGGTAAGGCAGATTGGGAACTGGCCCTGGTCGAGACAGCAAGCAATCTATCAAGGCAGAAAGCAACCTTGGCTGGTGGATTTGATCCATTGCTCTTGAATGGCATGTATGATCAAGGAATGGTAAGGCAGCATGTGAGCACTGCTCAAATGACTGGAGGCAGCGCCAGCAGCGTGGCATTGCCTGGCCTGGGAAAGAGCACGACCCCTGTATTGGCTCTCCCAGCCCCAGATGGAACCGTTCAAACAGTCGGACAAGATCCATTTGCTGCATCCTTGAGCATTCCCCCTCCGTCGTATGTGCAGATGGCTGATATGGAGAAGAAACAACAGTTTCTTACGCAGGAACAGCAGCTATGGCAGCAGTATGGAAGAGATGGGATGCAAGGCCAAGCCAGTTTGGCCAAGTTGGCTGGTGCTGGTTACTATGCTCAGGGTCCTATGCCAATGATGCCTTATGGGATGCCGCCCATCAATGGAATGGGACCACCAGGCGGGGTTGGCATCTATTGGGGATGGGTCAGCCTTTTTATTAACAGAGAGACCCCCTAG 1716 51.22 MAPSSIRKAIGSVKDQTSIGIAKIASNMAPDLEVAIVKATSHDDDPAAEKYVQEILNLTKYSHGYVNACVAAVSKRLGKTRDWVVALKALVLVHRLLAEGDPGFQREILYATRRGTRLLNMSDFRDEAHSNSWDHSAFVRTFAMYLDQRLEFILYEKKSSSGGSDGGDERFGTREEPVTPLREMKPERIFGKMGHLQRLLDRFLACRPTGLAKNNRMVLIALYPVVRESFQLYADICEVLAVLLDRFFEMEYPDCRITDKLLETLEEFVRDRAKGPKSPERNEEPQPVAREEEPVPDMNEIKALPPPENYTPPPPPPPEPEPKPQQPQVTEDLVNLRDEGVTADDQGNRFALALFAGPGANNTNGSWEAFPSNGQPEVTSAWQTPAAETGKADWELALVETASNLSRQKATLAGGFDPLLLNGMYDQGMVRQHVSTAQMTGGSASSVALPGLGKSTTPVLALPAPDGTVQTVGQDPFAASLSIPPPSYVQMADMEKKQQFLTQEQQLWQQYGRDGMQGQASLAKLAGAGYYAQGPMPMMPYGMPPINGMGPPGGVGIYWGWVSLFINRETP* 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5011753 5014271 - Vvi4g489 Vvi4g489 785268

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g489 571 ProSiteProfiles ENTH domain profile. 24 160 IPR013809 -
Vvi4g489 571 MobiDBLite consensus disorder prediction 306 325 - -
Vvi4g489 571 Pfam ANTH domain 31 265 IPR011417 GO:0005543
Vvi4g489 571 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 165 IPR045192 GO:0048268|GO:0072583
Vvi4g489 571 PANTHER CLATHRIN ASSEMBLY PROTEIN 256 538 IPR045192 GO:0048268|GO:0072583
Vvi4g489 571 PANTHER CLATHRIN ASSEMBLY PROTEIN 176 255 IPR045192 GO:0048268|GO:0072583
Vvi4g489 571 Gene3D ANTH domain 173 274 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Vvi4g489 571 SMART enth_2 30 160 IPR013809 -
Vvi4g489 571 MobiDBLite consensus disorder prediction 271 298 - -
Vvi4g489 571 Gene3D - 2 155 IPR008942 -
Vvi4g489 571 PANTHER - 1 165 - -
Vvi4g489 571 PANTHER - 256 538 - -
Vvi4g489 571 PANTHER - 176 255 - -
Vvi4g489 571 MobiDBLite consensus disorder prediction 271 329 - -
Vvi4g489 571 SUPERFAMILY ENTH/VHS domain 30 152 IPR008942 -
Vvi4g489 571 CDD ANTH_N_AP180_plant 32 152 - -
Vvi4g489 571 SUPERFAMILY GAT-like domain 180 271 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g489 - - - vvi:100261235 943.725
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g489 Blo01g01391 Blo12g01075 Bda01g00749 Bda03g00072 Bpe02g01249 Bpe02g00559 Bma04g00069 . . . . . . . . . Cpe06g00339 . . . . . . . Cla05g01735 Cam05g1849 Cec05g1861 Cco05g1921 Clacu05g1837 Cmu05g1720 Cre05g1851 . . . . Lsi04g02125 Csa03g04333 . . Blo17g00018 Blo18g00021 . Bda13g01259 Bpe14g00582 Bpe04g00057 Bma01g01275 Bma02g00022 Sed05g1706 . Cmo09g00466 Cma09g00455 . . . . . Bhi09g02235 Tan01g3643 Cmetu04g0392 . Hepe01g2019 Mch11g0554 . . . . . . . . . . . Cme04g00411
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001058 4 2 5 5 5 2 0 2 2 1 2 2 2 2 2 3 2 3 3 2 1 3 3 3 4 4 2 5 4 1 81