Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g490 ATGGGGGTCTTAACCGTGTCTTTCTTTGTTCTTTGTATTATTGAGCTTGTTGCTGCACAGACGACCACTGACCGTGATGAAGTGGCGGCTCTCAACAAGCTGATAGATTACTGGAATTTGAGGAGCTTGAATTCCAGTATTGATCCCTGCACCCAGAATGCAACATGGGCTAGTAAAGATGCAAATCCCCGAGTCGCCTGTGACTGCACAAGCAACACCTGCCACATTACCCACCTGAAGATATATGCTCTGGACATTTCTGGTGAAATTCCTCCAGAATTATTCGTGCTAAAGAAACTGGTGGACTTGAATCTTGGTCAGAATGTATTAAGTGGCCCCATCCCAGCTGAAATTGGACAGTTATCAAATTTGCAATATCTTAGTCTTGGCATAAACAACCTGACAGGGAGGGTTCCTTCTGAGCTGGGAAATCTCACCAAGTTGGTTTCATTAAGTTTTGGCTCGAATAATTTTTTTGGACCATTACCTAAGGAGCTTGGAAATTTGACATCCTTACAGCAGCTGTACATTGATAGCAGTGGAGTGAGTGGACCAATTCCACAAGAGTTTGCAGGCTTGAAATCTCTTCAGATTCTCTGGGCATCTGATAATCTCTTCACTGGAAAGCTACCAGAATTCATCGGAACTTTAATAGAACTCAGAGACCTGCGAGTTGAGGGGACATTGCTTGAAGGCCCTATACCAAGCAGTTTTGGAGCTCTAACCAAACTGGAGGACCTGAGAATTGGTGATCTGAGAGGGCAAGATTCTTCTCTTGATTTCTTGGGAAGCCAAACAAGCTTGTCCATACTATCTTTGAGGAACTGTCGGGTGTCTGGCCGAATTCCAGACCAGCTTAGCACCTTCACTAAGTTGAAATATCTGGACTTGAGCTTCAACAAATTGACAGGAGAAATACTAAAATCATTCCAAGATTTTGTCTCATTAGAATATTTGTATCTTGGGAACAATAACTTGAATGGAGAGCTGCCTGCAAATATCATTAGTCAAGAGCTCATAGCACTGGATGTCTCCTTCAATCCTCTTTCTGGGAATTTACCACTAAATATCGCCAAAGTAGGATTATCGATGAATGTTCTTGGAACTTCCATCAATGCAAACAGTTTACAAGACAGGAAGGCTTCAGGGATGTTGCATTGCCTCCAAGGAAATATGAAGTGTACAAACAAAATTCCATCCTCTTCATTTTCTATCAAATGTGGAGGCACTGAACAAAGGTCTGCATCTGGGGTCAAATTTGATGATGACTCTGAAATACTAGGAGCTGCCTCATTGTACACAAGCCCTGATTATCAATGGGCAGTAAGCAACACTGGAAGCTTCATTTCCAACCCAAATGGACCTCAATATATAGCAAAGACAGATTCTCAAATCAGGGGAACTCTTGAGTCTGAACTGTATAAGACAGCAAGGGTTTCACCAAGCTCATTGAGGTACTATGGCCTGGGTTTGAAGAATGGGAAATATAGGGTTGAGCTCCACTTTGCAGAGATAGCCATGGAGGACTCTGTGTCATGGAAAGGCCTTGGAAGGCGTTTGTTTGATGTTTACATTCAGGGCGAGAGAGTTCTTGAAGGGTTCAACATTCAAAGAGAAGCAGGTGGGTCAAAGAGAGCCTTGGTGAAGACACTGGAGGCAAATGTCACAAACACAATCATGGAGATTCATTTCTTATGGGCTGGAAGAGGCACTTGCTGCATTCCATTTCAAAGCACATATGGACCATTAGTATCAGCCATCCATGCATATCAAGTGTCGGATGAAACTAGCTCTTCCTCCGAAAGCAACAAGAAGCGGATAGGAAAAGTAGTTGGAATAGTGGTTGGATGTGCAGGAGGGGTGGTGATAATCTCATCCATCTTCTACTTATGGTGGAAAAAGGAGGCATCTGGGCATACCCGAGTTCAAACAGAATCACCCAGGAAATGA 1950 43.28 MGVLTVSFFVLCIIELVAAQTTTDRDEVAALNKLIDYWNLRSLNSSIDPCTQNATWASKDANPRVACDCTSNTCHITHLKIYALDISGEIPPELFVLKKLVDLNLGQNVLSGPIPAEIGQLSNLQYLSLGINNLTGRVPSELGNLTKLVSLSFGSNNFFGPLPKELGNLTSLQQLYIDSSGVSGPIPQEFAGLKSLQILWASDNLFTGKLPEFIGTLIELRDLRVEGTLLEGPIPSSFGALTKLEDLRIGDLRGQDSSLDFLGSQTSLSILSLRNCRVSGRIPDQLSTFTKLKYLDLSFNKLTGEILKSFQDFVSLEYLYLGNNNLNGELPANIISQELIALDVSFNPLSGNLPLNIAKVGLSMNVLGTSINANSLQDRKASGMLHCLQGNMKCTNKIPSSSFSIKCGGTEQRSASGVKFDDDSEILGAASLYTSPDYQWAVSNTGSFISNPNGPQYIAKTDSQIRGTLESELYKTARVSPSSLRYYGLGLKNGKYRVELHFAEIAMEDSVSWKGLGRRLFDVYIQGERVLEGFNIQREAGGSKRALVKTLEANVTNTIMEIHFLWAGRGTCCIPFQSTYGPLVSAIHAYQVSDETSSSSESNKKRIGKVVGIVVGCAGGVVIISSIFYLWWKKEASGHTRVQTESPRK* 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5017842 5022700 - Vvi4g490 Vvi4g490 785269

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g490 649 Gene3D - 400 593 - -
Vvi4g490 649 Gene3D Ribonuclease Inhibitor 25 254 IPR032675 -
Vvi4g490 649 Pfam Malectin domain 403 587 IPR021720 -
Vvi4g490 649 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 15 637 - -
Vvi4g490 649 PANTHER AUXIN-RESPONSIVE PROTEIN 15 637 - -
Vvi4g490 649 SUPERFAMILY L domain-like 66 351 - -
Vvi4g490 649 Pfam Leucine rich repeat 267 326 IPR001611 GO:0005515
Vvi4g490 649 Gene3D Ribonuclease Inhibitor 255 374 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g490 - - - vvi:100249164 1227.23
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g490 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0071666 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1