Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g493 ATGCCTACCATTGATCTGGACGATATTGTGCCCAAGGTTTCACGATCTGCTGCTCTGCGTTTCTCGCCATTGCTCGTTATCAATGGCCTTTCTCGGAAGGCTTCTTTCTATTGGAAGCTTCCTCAACAGCCCATCAAGCTCTCTGTTCTCAAATTGGATGGCTCTTGTTTCCAAATTGAAGTAACAAAGACATCAACTGTTGCAGAGCTCAAGCAGGCAGTGGAGGATGCCTTTAGTCATTTGCCGAAGAAGGGACCTGGAAAGATTTCATGGCTGCATGTTTGGGGCCATTTCTGCTTATGTTATAATGATCAGAAGCTAGTAACTGAAACCGAGTATATCAAAAACTATGGGATCAAAGACGGTGATCAGGTGCAGCTTCATTTTGTCCGGCATCAATCAATCAACTATAACTTGAGAAAAAGGCGACAAAAAAGGCGGTGTGGTGCTTTGACACAACCCAGAATATCAGATGGCTGTGAAGAGAAAGAATCCAATGGCGAAGAAGATGATAATCAAGAGAATCAGAAGAAGGAAATTTTCAGAAAACGGGAGAAGTTCAAATTGTCAATGTTATTGGGTGGTTGGTTCTCATACTCCAAACTCACAAGCCCAGGAAGAAGGAAATATGAAGGCAAGACGAGTAAATCAAAATTTAGCAGTGGCTTGTTGGGCAGTTTTAGAAAGATGGGTCCAATTTTATCTTCTATTTTTTTTAGTGGAATGAAAAACCCACAAAAGAGTGGGACACGCTAA 756 41.93 MPTIDLDDIVPKVSRSAALRFSPLLVINGLSRKASFYWKLPQQPIKLSVLKLDGSCFQIEVTKTSTVAELKQAVEDAFSHLPKKGPGKISWLHVWGHFCLCYNDQKLVTETEYIKNYGIKDGDQVQLHFVRHQSINYNLRKRRQKRRCGALTQPRISDGCEEKESNGEEDDNQENQKKEIFRKREKFKLSMLLGGWFSYSKLTSPGRRKYEGKTSKSKFSSGLLGSFRKMGPILSSIFFSGMKNPQKSGTR* 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5060732 5066712 + Vvi4g493 Vvi4g493 785272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g493 251 PANTHER UBIQUITIN-LIKE SUPERFAMILY PROTEIN 11 236 - -
Vvi4g493 251 SUPERFAMILY Ubiquitin-like 41 128 IPR029071 -
Vvi4g493 251 Gene3D - 41 139 - -
Vvi4g493 251 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 11 236 IPR039690 GO:0000398|GO:0005689
Vvi4g493 251 Pfam Ubiquitin-like domain 45 132 IPR040610 -
Vvi4g493 251 MobiDBLite consensus disorder prediction 157 178 - -
Vvi4g493 251 CDD Ubl_SNRNP25 45 132 IPR040610 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g493 - - K13153 vvi:100250997 450.669
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g493 Vvi9g563 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g493 . . . . . . . . . . Cma01g01506 . Car09g00397 . . . Cpe06g00334 . . . . . . . Cla05g01733 Cam05g1846 Cec05g1858 Cco05g1918 Clacu05g1834 Cmu05g1717 Cre05g1848 Cone4ag1781 . . . . Csa03g04329 Chy04g00372 . . . . . . . . . Sed13g2019 . Cmo09g00460 . . . . . Cpe02g00448 Bhi09g02232 Tan01g3635 Cmetu04g2649 . Hepe01g2015 Mch11g0551 . . . . . . . . . . . Cme04g00414
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013027 0 1 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 28