Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g496 ATGGCCTTCGCAGCCGTTTTCCACGTTCCACCCACCTCTTCTCACCATTACTCCCAGTTGTGTTCCCTTGGGCTCAACAGGAAGCAGAAGAGATTAGCTGTTATGACAACTTCAAAAAGAAAGGGTCATTCCAGGCGGATTGTCAAATCAGTCTTGAACAACAGGAAGTCAAGCATAAATGACAATGGGTCAACTGAACCAGCTAGGGTTCTTCTGGAGAGGTTGTTTGCACAGACGCAGAAACTAGAAGAACATATGAGTAGGGATCCTGGTCTTCCACTGGACATACAATTGGGGCTTAACCTTGAAACCTTAGAATCTGATCTTCAGGCTGCATTGGTAGCCTTAAAGAAAAAGGAAGAAGATCTCCAAGATGCAGCGGGGATGGTTTTGATGGAACATACTGAATTAAACCGTGCAAAGGAGGAGTTGAAGCGGCATGCAGAAGAAATTGCTGTTGCTTGCTCTAAGCACGAGAAACTAGAAGAGGAGCTGAAGCAGGCAAATCTTAACCTAGCTTCTCGAGCAAGGCAGATAGAAGATCTAAAACTTCAGCTTAAAGACAGAGACCAAGAAATTTTTGCTGCACGATCTGCTCTGTCTTCGAAACAAGATGAAATGGATAAAATGAGAAATGAGTTGATGAAGAAGACTGAGGAAGCTGCTAAGAAGGAATCTGAACTCCAATCAATGGCTAAGCTCCTGGATGAAGCCAATGAAGTTGTCAAGAAACAAGAAATAGAACTGCAAGAACTTCAAAAATCAATCCAAGAGAAAGAGGAAGAACTAGAAGAATCTATGATGCTTCGGAAACTTGAAGAGAAGAAGCTCAAAGTGGCAGAGGCCAATTTGGAGAAGAAGACAATGGATTGGTTATTAGCAAAGGAAGAACTGAAGAAATTGGCAGAGGATGCAGCTAAACACATGGGAGAGAGTAATAAAACTATGAAGGAATTCAGAAGAGCGAAGAGGCTTCTTCATGATGTGAGATCTGAATTGGTTTCTTCCCAGAAATCTCTCGCTTCATCAAGACAAAAAATGCAAGAGCAGGAGAAGCTGTTAGAGAAACAACTCGCAGAACTTGAAGAACAAAAAACTAGCATTAATCATTACATGACGAGTTTGAAAGATGCCCAAATTGAAGTAGAGAGTGAAAGAGTGAAACTGAGGGTTGCAGAATCTCGAAACAAGGAGCTTGAGTGGGACTTATCTGTGAAGAAGGAGCTCATGGAAGAGTTACAAGAAGAGCTGAGGAAAGAAAAATCTTCTCTGCAACAGGTAATCCAAGAGACGTCTTTTCTCCAAAAGGAGCTTGATCAGAAAACTACTGAATTTGGAGAACTGCATAACCTGCTTCAGGTTAAAGAGTCGGAACTAGTGGAAGCTAGACTAGAAATCCAGCATTTGAAATCTGAGCAGGTGTCCCTTCAGCTTATCTTGAAGGAGAGAGATTTGGAACTCTTCAATGCACAGAAAAAGTTGGAGGAAGTAAACCAGGAAGTTTCGGAGCTAAAGATGCTCATGAATAATAGAGAAGACCAGCTTATGCAGGCCACTACTTTGCTGAAGGAGAAAGAGGAACATCTGCTGATAATGCAACATGAGCTCAATGATACGAAGCTGAAATTTTCTGAAGCAGAGAGTGTGGTAGAACGGATTGTAGACCTCACAAACAAACTGGTTATCTGCACAAAGGATGAAGAATGTACTGCAACTAGCCCATTTGATGATATGGGCCAGAATTTACTACACCAACTGTTTGAGAAACCAACCGATGATTTTAAGAGGCAGGAGAAAAGGTTAGAAACTGAACTCGAGTTGACCAGAGAAAGCCTCAGAACGAAAGAACTGGAAGTTCTAGCTGCACAGAGGGCTCTCACAATTAAAGACGAGGAACTCAAAATAGCTCTTGAGAGATTAGATGCAAGGGAGAAGGAACTTAGAAGGATGAAGGAAGAAACGATGGAGGATGCTAATCATCTGAAGAATCTTTATGCTTTGGCACAAGAAAGAATTGGTGAGAAAAGTGTTGGTGATTTGGCCATTGAGAAACTCCAACTGGAGGCAGCTCAACTGGAAGTTGAAGCTGCAACTAGCGCACTACATAAACTTGCAGAAATGAGTTGTGAGCTTCTGCATAATGTTAGCTTGAGCGTTGACTCTGAGACTGATACTGCTATATTCCTGCCAAATGGTTTTGATCCCTGGTTAAGTATGCATGAGAATAATGAGCATTTTACCAAGGTTAAAACTGAAGTTGCTCGGCTTTCAGCTATCACTGACCAGCTTGTGCAAGAGGCCGGTGTTGTTGGTGCTGCAAACTAG 2325 42.19 MAFAAVFHVPPTSSHHYSQLCSLGLNRKQKRLAVMTTSKRKGHSRRIVKSVLNNRKSSINDNGSTEPARVLLERLFAQTQKLEEHMSRDPGLPLDIQLGLNLETLESDLQAALVALKKKEEDLQDAAGMVLMEHTELNRAKEELKRHAEEIAVACSKHEKLEEELKQANLNLASRARQIEDLKLQLKDRDQEIFAARSALSSKQDEMDKMRNELMKKTEEAAKKESELQSMAKLLDEANEVVKKQEIELQELQKSIQEKEEELEESMMLRKLEEKKLKVAEANLEKKTMDWLLAKEELKKLAEDAAKHMGESNKTMKEFRRAKRLLHDVRSELVSSQKSLASSRQKMQEQEKLLEKQLAELEEQKTSINHYMTSLKDAQIEVESERVKLRVAESRNKELEWDLSVKKELMEELQEELRKEKSSLQQVIQETSFLQKELDQKTTEFGELHNLLQVKESELVEARLEIQHLKSEQVSLQLILKERDLELFNAQKKLEEVNQEVSELKMLMNNREDQLMQATTLLKEKEEHLLIMQHELNDTKLKFSEAESVVERIVDLTNKLVICTKDEECTATSPFDDMGQNLLHQLFEKPTDDFKRQEKRLETELELTRESLRTKELEVLAAQRALTIKDEELKIALERLDAREKELRRMKEETMEDANHLKNLYALAQERIGEKSVGDLAIEKLQLEAAQLEVEAATSALHKLAEMSCELLHNVSLSVDSETDTAIFLPNGFDPWLSMHENNEHFTKVKTEVARLSAITDQLVQEAGVVGAAN* 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5088358 5092071 - Vvi4g496 Vvi4g496 785275

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g496 774 Coils Coil 340 367 - -
Vvi4g496 774 Coils Coil 102 126 - -
Vvi4g496 774 Coils Coil 630 671 - -
Vvi4g496 774 Coils Coil 680 707 - -
Vvi4g496 774 Coils Coil 598 618 - -
Vvi4g496 774 Coils Coil 137 185 - -
Vvi4g496 774 PANTHER SYNAPTONEMAL COMPLEX PROTEIN-RELATED 29 769 - -
Vvi4g496 774 Coils Coil 452 472 - -
Vvi4g496 774 Coils Coil 480 528 - -
Vvi4g496 774 Coils Coil 200 290 - -
Vvi4g496 774 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 29 769 - -
Vvi4g496 774 Coils Coil 375 444 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g496 - - - vvi:100262916 1308.12
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g496 Blo01g01392 . . . . Bpe02g00557 . . . . Cma01g01507 . Car09g00395 . . . Cpe06g00331 . . . . . . . Cla05g01731 Cam05g1844 Cec05g1856 Cco05g1916 Clacu05g1832 Cmu05g1715 Cre05g1846 Cone4ag1779 Cone7ag1694 . . Lsi04g02121 Csa03g04327 Chy04g00374 . . . . . . . . . Sed05g1707 Cmo01g01562 Cmo09g00457 Cma09g00450 . . . . Cpe02g00447 Bhi09g02230 Tan01g3630 Cmetu04g2943 . Hepe01g2013 Mch11g0550 . . . . . . . . . . . Cme04g00416
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010102 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 33