Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g500 ATGATAGTCATTAGACTGGTGGACTCTAAAAGATGGAGAATAGTTGAAGTTGAGCTTGAACACAACCATCAGGTGAGTCCACAAATCAAGCGATTTTATAAGTCACATAAGAAAATGATTCTTGCAGCCAAAAAAGCACAGCCCCCATCAGAGCCTGTCACAGAAGTACATACTATTAAGTTGTATCGAACAGCTGTTGTGGATTCCGGGTGCAATGGGTACACAAATGTTAATGAGGGAGAGAGTTTGAATCCTGTTGATCACTCTAAGCATTTGGATCTTAAAGAAGGGGATGCACATGCAGTTTACAACTACTTCTGTCGAATGAAGTTGACAAACCCAAACTTCTTTTACTTGATGGATCTTGATGATGAAGGGCGGTTGAGGAATGTATTTTGGGCAGATGCCAGGTCCAGGGCTGCATATGGTTACTTTTGTGACACAGTTGCAATTGACACAAGCTGCTTGGCAAACAAATTTGAGATCCCTCTGATTTCATTTGTTGGAATGAACCACCATGGGCAATCTGTACTGTTGGGCTGTGGCTTCCTTGGACATGAGTCGGTGGAGTACTTTGTGTGGATTTTTCGGGCATGGCTTACATGCATGCTAGGCCGCCCTCCCCAAGTTATTATTACTGACCAGTGTAAACCATTGCAAAATGCCATTTCTGAGGTCTTTCCAGGAGCTCGACATTGTTATTGTTTGTGGTATATCATGCAACGAGTTCCAGAGAAGTTAGGAGGACTGAAGGGATTTGAAACAATTAAAAGGCAAATGAATAAAGCAGTTTATGAATCCTTAAAGATAGCCGAGTTTGAAACTTCTTGGGCTGATATGATCAAACGGCACAACCTTGGGGATAATAAATGGCTTCAGACATTGTATGAAGATCGGCAACGATGGGTTCCAGTTTACTTGAAAGACACATTTTTTGCAGGAATGATTCCTGTCCAAGAAAACGATGGCTTGAATGCATTTTTTGATGGTTATATACATAAACATACATCCTTTAAGGAATTTGTTGATAAGTATGATTTAGCTCTACATAGGAAGCACCTGAAAGAAGCCATGGCAGATCTAGAATCAAGAACTTCAAGTTTTGAGCTGAAAACAAAATGTAATTTCGAGGTGCAGCTTTCCAAGATGTACACAAAGGCGATATTTATGAAGCTCCAATCAGAGGTTGAGGGAATGTACTCTTGCTTCAACACAAAGCAGGTGAGCGTTAATGGACCGATAATAACATACATGGTCAAGGAAAGAGTTGAAGTTGAAGGAAAGGAGAAAGTGGTTAGGTATTACGAGGTTTTGTATGAGACAACACAGGTAGACATCCGATGCATTTGCAGTTTGTTCAACTTTAAAGGATATTTGTGCAGGCATGCATTAACTGTCCTAAATTATAATGGTGTGGAAGAAATCCCGAGTCGTTACATTTTGCCTCGATGGAGTAAGGACTTCAAGTGCAGGTATGTTGTAGATCATGGCTCTGGTGATATTGATGTGTATAACCCAGTGCATTGGCAAAATAATCTATATAAACGTGCCATTCCCCTTGTGGAAGAAGGGGCACTGTCTCAACAACATTATAAAGTAGTATTGGATGAATTGCAAGGGTTGTTGAACAAGTTCAGTCAGTCCTCATCTTCCAAACAACAGTAA 1665 40.54 MIVIRLVDSKRWRIVEVELEHNHQVSPQIKRFYKSHKKMILAAKKAQPPSEPVTEVHTIKLYRTAVVDSGCNGYTNVNEGESLNPVDHSKHLDLKEGDAHAVYNYFCRMKLTNPNFFYLMDLDDEGRLRNVFWADARSRAAYGYFCDTVAIDTSCLANKFEIPLISFVGMNHHGQSVLLGCGFLGHESVEYFVWIFRAWLTCMLGRPPQVIITDQCKPLQNAISEVFPGARHCYCLWYIMQRVPEKLGGLKGFETIKRQMNKAVYESLKIAEFETSWADMIKRHNLGDNKWLQTLYEDRQRWVPVYLKDTFFAGMIPVQENDGLNAFFDGYIHKHTSFKEFVDKYDLALHRKHLKEAMADLESRTSSFELKTKCNFEVQLSKMYTKAIFMKLQSEVEGMYSCFNTKQVSVNGPIITYMVKERVEVEGKEKVVRYYEVLYETTQVDIRCICSLFNFKGYLCRHALTVLNYNGVEEIPSRYILPRWSKDFKCRYVVDHGSGDIDVYNPVHWQNNLYKRAIPLVEEGALSQQHYKVVLDELQGLLNKFSQSSSSKQQ* 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5155699 5171733 - Vvi4g500 Vvi4g500 785279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g500 554 Pfam MULE transposase domain 149 241 IPR018289 -
Vvi4g500 554 Pfam SWIM zinc finger 443 469 IPR007527 GO:0008270
Vvi4g500 554 PANTHER PROTEIN FAR1-RELATED SEQUENCE 6-LIKE ISOFORM X1 1 548 - -
Vvi4g500 554 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 1 548 IPR031052 GO:0006355
Vvi4g500 554 SMART 26again6 446 473 IPR006564 GO:0008270
Vvi4g500 554 ProSiteProfiles Zinc finger SWIM-type profile. 435 471 IPR007527 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g500 K17604 ZSWIM3; zinc finger SWIM domain-containing protein 3 - vvi:100242411 1117.83
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g500 Vvi9g578 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g500 . Blo12g01072 . . . . . . . . Cma01g01512 . . . . . . . . . . . . . Cla05g01726 Cam05g1839 Cec05g1853 Cco05g1910 Clacu05g1827 Cmu05g1710 Cre05g1841 . Cone7ag1692 . . Lsi04g02118 Csa03g04322 Chy04g00378 . . . . . . . . . . Cmo01g01565 . . . . . . Cpe02g00444 . . . . . . . . . . . . . . . . . Cme04g00421
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000034 2 16 6 1 1 11 17 9 10 12 11 12 16 12 12 16 11 24 14 12 12 11 10 1 9 10 11 36 30 10 365