Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g501 ATGAAGCAGCATCACACTTCCTCAGAAGCAGTATCCTCATCGTCAACGATATCATCGTCGACAGTACCATCATCATCGGAGCAATCGCAGCCGCCCATCGCCACTCCGTCGCCGAGTCCATCAATGGGCGACGATCCCTCCCTGGCCGCCTCTAGAGACGGCCACGGCCAAGAATCGGTGACCGTCGATCGCCGCACCGACTTCTCCGCCGTCTGCAAATGGACGGTTCACAATTTCCCCAAAATCAAAGCTAGGGCACTGTGGAGCAAGTACTTCGAAGTCGGTGGCTTCGATTGTCGTCTCCTAATCTACCCTAAAGGCGACTCTCAGGCTTTGCCTGGCTACATCAGCGTCTATCTCCAAATCATGGACCCTCGCGGCTCATCGTCCTCCAAATGGGACTGCTTCGCCAGCTACCGCCTCGCAATCGTTAATCACGCCGACGATTCCAAGTCTATCCACCGCGATTCGTGGCACCGGTTCTCCAGTAAGAAGAAATCGCACGGTTGGTGCGATTTCACCCCCTCCACTACGCTTTTCGATTCCAAGTCTGGTTATTTGTTCAACAATGACTCCGTCCTCATAACCGCCGATATTCTTATATTGAATGAATCCGTAAATTTCACTCGCGATAATAATGAATTGCAATCGGCCTCATCCATGGCTTCCATGGTTGTGGCCGGTCCGGTGTCGGATGTGTTGAGTGGAAAATTTACTTGGAAAGTACATAATTTTAGTCTATTCAAAGAAATGATAAAGACCCAAAAGATAATGAGTCCCGTTTTCCCAGCAGGAGAGTGTAATCTTAGGATTAGTGTCTACCAAAGTTCGGTTAATGGGGTTGAGTATTTGTCCATGTGTTTGGAGAGTAAGGATACGGAGAAGGCAGTGGTGTCTGACCGGAGTTGTTGGTGTTTGTTTCGGATGTCAGTTTTGAACCAGAAACCGGGGTTGAATCACATGCATAGGGACTCGTATGGTAGGTTTGCAGCGGATAATAAGAGTGGGGACAATACTAGTTTGGGGTGGAATGATTATATGAAAATGTCAGATTTTATTGGATCAGATTCAGGGTTTTTGGTTGATGATACTGCAGTCTTTAGTACATCCTTTCATGTGATTAAGGAGTTCAGCAGTTTTTCAAAGAATGGGGGTTTGATTGGGGTAAGGGGTGGAAGTGGTGGCACACGGAAGTCTGATGGGCATTTGGGGAAATTCACTTGGAGGATTGAGAACTTCACAAGGTTGAAAGATCTTCTAAAGAAGAGGAAGATTACGGGTTTGTGCATCAAGAGCAGGAGGTTTCAGATTGGGAATCGTGATTGTCGCCTGATTGTTTATCCTCGAGGGCAGTCTCAGCCACCATGCCACCTTTCAGTCTTTCTCGAGGTTACAGATTCACGAAATACTTCCAGTGATTGGAGTTGTTTTGTGAGCCACCGATTGTCGGTTGTGAACCAAAGGATGGAAGACAAGTCTGTTACCAAGGAATCTCAAAACCGCTACTCAAAAGCTGCAAAGGACTGGGGCTGGCGAGAATTTGTGACACTCACTAGTCTCTTTGATCAAGATTCTGGATTTCTTGTTCAGGACACTGTTGTGTTCTCTGCAGAGGTTCTTATTTTGAAAGAGACATCCACAATGCTGGACTTGACTGATCAAGACAGTGAGTCAAGCAACAGTGGTTCCCAGATTGATAAGATTGGGAAAAGAAGTTCATTTACATGGAGAGTGGAAAATTTCATGTCCTTCAAGGAAATAATGGAAACTCGAAAAATTTTTAGCAAATTCTTTCAAGCTGGTGGATGTGAGCTTCGAATTGGTGTCTATGAATCCTTTGACACCATATGCATATACCTCGAGAGTGATCAATCAGTTGGGAGTGATCCTGATAAAAATTTTTGGGTCAGATACAGGATGGCTGTGGTGAATCAAAAGAACCCTGCCAAAACTGTGTGGAAGGAGTCCTCTATTTGCACAAAGACATGGAATAATTCCGTTCTTCAATTCATGAAGGTATCGGATATGCTGGAGGCAGATGCAGGATTTCTTGTACGTGACACAGTTGTTTTTGTTTGTGAAATCTTGGATTGCTGTCCGTGGTTCGAATTTTCAGACCTAGAGGTTTTGGCTTCCGAGGATGACCAGGATGCTTTAACCACTGACCCTGATGAACTCATTGATTCAGAAGACAGTGAAGGAATAAGTGGAGATGAAGAAGACATCTTTAGAAACCTTCTTTCCAGAGCTGGCTTTCACCTCACATACGGAGATAATCCTGCACAACCACAGGTCACTTTGAGAGAAAAGCTTCTAATGGATGCTGGTGCCATAGCTGGTTTCCTGACTGGACTTCGTGTTTATCTCGATGACCCTGCTAAGGTAAAGCGCTTGCTTCTTCCAACCAAACTCTCTGGCAGCAATGATGGAAAGAAAGTCACAAAGACTGATGAATCTTCCCCCAGTTTGATGAACTTGTTGATGGGAGTTAAAGTGTTGCAGCAGGCGATTATTGATTTACTTTTGGATATAATGGTTGAATGTTGCCAACCTTCAGAAGGAAATTCTAATGATGATTCTTCTGATGAAAACTCAAAACTTTCTCCTGGTGGCAGTGGAGCTGTCAGCCCACTGGAATCAGATCGGGAAAATGGAGCAACAGAATCTGCAGAATTCCCTGTATATGAGAGATTGGATTCTGGGGTATATGAAAGTACCAATGTGTCTGCTGTACAAAGCTCAGACATGAATGGTACTGTTGTACCTGAAAAAGCTGTTCCTGGACAGCCTATAAGTCCACCAGAGACATCTGCAGGGGGTTCCATCGAAAATGCTTCCCTTCGCTCGAAGACCAAGTGGCCAGAGCAATCTGAGGAACTATTGGGATTGATTGTGAATTCACTGAGAGCCCTAGATGGCGCGGTTCCACAAGGTTGTCCCGAGCCAAGGCGACGGCCCCAATCTGCACAAAAGATTGCTCTTGTATTGGATAAAGCTCCCAAGCACCTGCAACCAGACCTAGTTGCTTTGGTACCCAAATTGGTTGAGCACTCAGAGCATCCACTTGCTGCTTGTGCACTTCTGGATCGACTTCAGAAGCCAGATGCTGAACCTGCATTGCGGATACCGGTTTTCGGGGCTCTTAGTCAACTGGAGTGTGGCAGTGAAGTTTGGGAACGCATTTTATTCCAATCTTTTGAGCTTTTGAGTGACTCAAATGATGAACCACTGGCAGCAACCATAAATTTCATCTTTAAAGCAGCATCTCAATGCCAACATCTTCCTGAAGCAGTCAGATCTATACGTGTTAAGCTAAAACATCTAGGTGCAGAAGTGTCTCCTTGTGTCCTTGATTTTTTGAATAAAACTGTAAATAGTTGGGGAGATGTTGCTGAAACAATACTGAGAGATATTGATTGTGACGATGATTTTGGTGACAATTGCTCAACAATTCCTTGTGGGCTTTTCTTATTTGGTGAAAACGGGCCTACTTCCGAAAGGTTGCATGCAATTGATGAACAGGCTTTCTGTGCTACTCGGCATTTTTCAGATATCTATCTCCTGATTGAGATGTTATCGATACCTTGCCTTGCTGTTGAAGCTTCCCAAACATTTGAGAGAGCTGTAGCTCGAGGGGCCTTTGTGGCCCAGTCAGTCGCCATGGTCTTGGAAAGTCGCCTTGCTCAAAGATTGAATTTTAATTCCAGATTTGTTGCTGAAAGTTTTCAGCACACAGATGTTGTAGTAGAAGGAGAAACCAATGAGCAGCTAAGAGCTCAACGAGATGATTTTTCTTCAGTTCTCGGTCTTGCTGAGACATTGGCTCTCTCTCGAGATCCTCGTGTAAAGGGATTTGTCAAGGTGCTTTACACTATATTGTTTAAATGGTATGCTGATGAATCATACAGAGGCAGGATGCTTAAGAGACTTGTTGATCGCGCCACCAGCACTACAGACAGTAGTCGTGAAATAGATTTAGAATTGGAAATTTTGGTTATTTTGGTTTGTGAAGAACAAGAAATTGTTAGACCAGTTCTGAGCATGATGCGTGAGGTTGCTGAACTTGCAAATGTTGATCGGGCAGCTCTTTGGCATCAATTGTGCACCAGTGAAGATGAAATTATTCGCATGCGTGAAGAGAGGAAAGCTGAAATTTCCAATTTGGTTAAAGAAAAAGCTATCATATCACAAAGGCTTAGTGAATCTGAGGCTACCAGCAACCGTCTTAAGTCTGAAATGAGGGCTGAGGCGGATCGGTTTGCTCGAGAAAAAAAGGAGCTTTCTGAACAGATACAAGAAGTTGAAAGTCAGCTAGAATGGCTTCGATCAGAGCGGGATGAAGAAATTACAAAGCTAACTTCAGAGAAGAAAGTTCTTCAGGATCGCCTTCATGATGCAGAGGCACAACTTTCACAGTTGAAGTCTCGAAAACGCGATGAATTGAAGAGAGTAGTGAAGGAAAAAAATGCTCTTGCTGAAAGGTTGAAGAGTGCTGAAGCTGCAAGGAAAAGGTTTGATGAAGAACTAAAACGTTATGCAACAGAGAATGTGACAAGAGAGGAAATTCGACAGTCACTTGAAGATGAAGTTCGACGGTTGACACAAACAGTTGGCCAAACTGAAGGAGAAAAGCGGGAGAAGGAAGAGCAGGTTGCTCGATGTGAAGCATACATTGATGGAATGGAATCAAAATTGCAAGCCTGCCAGCAATATATTCACACCCTCGAGGCTTCGCTCCAGGAGGAAATGTCCCGACATGCTCCTCTATATGGTGCTGGTTTGGAAGCACTATCAATGAAGGAACTGGAGACATTGGCCCGTATCCATGAAGAAGGGCTTAGGCAGATTCATGCCATCCAACAGCACAAAGGGAGTCCAGCTGGCAGTCCTCTTGTGAGCCCTCACACCCTTCAGCACTCCCATGGGCTGTACCCTCCTGCACCACCTCCAATGGCTGTTGGATTGCCCCCTTCTCTCATTCCAAATGGTGTTGGGATCCACAGCAATGGGCATGTGAATGGGGCAGTTGGATCCTGGTTCAACCATAATTGA 5052 44.99 MKQHHTSSEAVSSSSTISSSTVPSSSEQSQPPIATPSPSPSMGDDPSLAASRDGHGQESVTVDRRTDFSAVCKWTVHNFPKIKARALWSKYFEVGGFDCRLLIYPKGDSQALPGYISVYLQIMDPRGSSSSKWDCFASYRLAIVNHADDSKSIHRDSWHRFSSKKKSHGWCDFTPSTTLFDSKSGYLFNNDSVLITADILILNESVNFTRDNNELQSASSMASMVVAGPVSDVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGVEYLSMCLESKDTEKAVVSDRSCWCLFRMSVLNQKPGLNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFIGSDSGFLVDDTAVFSTSFHVIKEFSSFSKNGGLIGVRGGSGGTRKSDGHLGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTSSDWSCFVSHRLSVVNQRMEDKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVLILKETSTMLDLTDQDSESSNSGSQIDKIGKRSSFTWRVENFMSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQSVGSDPDKNFWVRYRMAVVNQKNPAKTVWKESSICTKTWNNSVLQFMKVSDMLEADAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDSEDSEGISGDEEDIFRNLLSRAGFHLTYGDNPAQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSGSNDGKKVTKTDESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEGNSNDDSSDENSKLSPGGSGAVSPLESDRENGATESAEFPVYERLDSGVYESTNVSAVQSSDMNGTVVPEKAVPGQPISPPETSAGGSIENASLRSKTKWPEQSEELLGLIVNSLRALDGAVPQGCPEPRRRPQSAQKIALVLDKAPKHLQPDLVALVPKLVEHSEHPLAACALLDRLQKPDAEPALRIPVFGALSQLECGSEVWERILFQSFELLSDSNDEPLAATINFIFKAASQCQHLPEAVRSIRVKLKHLGAEVSPCVLDFLNKTVNSWGDVAETILRDIDCDDDFGDNCSTIPCGLFLFGENGPTSERLHAIDEQAFCATRHFSDIYLLIEMLSIPCLAVEASQTFERAVARGAFVAQSVAMVLESRLAQRLNFNSRFVAESFQHTDVVVEGETNEQLRAQRDDFSSVLGLAETLALSRDPRVKGFVKVLYTILFKWYADESYRGRMLKRLVDRATSTTDSSREIDLELEILVILVCEEQEIVRPVLSMMREVAELANVDRAALWHQLCTSEDEIIRMREERKAEISNLVKEKAIISQRLSESEATSNRLKSEMRAEADRFAREKKELSEQIQEVESQLEWLRSERDEEITKLTSEKKVLQDRLHDAEAQLSQLKSRKRDELKRVVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEIRQSLEDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEASLQEEMSRHAPLYGAGLEALSMKELETLARIHEEGLRQIHAIQQHKGSPAGSPLVSPHTLQHSHGLYPPAPPPMAVGLPPSLIPNGVGIHSNGHVNGAVGSWFNHN* 1684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5180508 5200603 + Vvi4g501 Vvi4g501 785280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g501 1683 ProSiteProfiles MATH/TRAF domain profile. 69 199 IPR002083 GO:0005515
Vvi4g501 1683 CDD MATH 573 695 IPR002083 GO:0005515
Vvi4g501 1683 PANTHER TRAF-LIKE FAMILY PROTEIN 34 1682 - -
Vvi4g501 1683 SUPERFAMILY TRAF domain-like 233 377 - -
Vvi4g501 1683 Gene3D - 1440 1634 - -
Vvi4g501 1683 ProSiteProfiles MATH/TRAF domain profile. 571 695 IPR002083 GO:0005515
Vvi4g501 1683 SUPERFAMILY TRAF domain-like 404 546 - -
Vvi4g501 1683 SMART math_3 71 179 IPR002083 GO:0005515
Vvi4g501 1683 SMART math_3 573 676 IPR002083 GO:0005515
Vvi4g501 1683 SMART math_3 240 352 IPR002083 GO:0005515
Vvi4g501 1683 SMART math_3 408 520 IPR002083 GO:0005515
Vvi4g501 1683 MobiDBLite consensus disorder prediction 852 871 - -
Vvi4g501 1683 MobiDBLite consensus disorder prediction 852 893 - -
Vvi4g501 1683 Coils Coil 1410 1515 - -
Vvi4g501 1683 Coils Coil 1523 1550 - -
Vvi4g501 1683 ProSiteProfiles MATH/TRAF domain profile. 403 539 IPR002083 GO:0005515
Vvi4g501 1683 CDD MATH 236 367 IPR002083 GO:0005515
Vvi4g501 1683 SUPERFAMILY TRAF domain-like 572 696 - -
Vvi4g501 1683 CDD MATH 404 539 IPR002083 GO:0005515
Vvi4g501 1683 SUPERFAMILY TRAF domain-like 70 207 - -
Vvi4g501 1683 CDD MATH 74 199 IPR002083 GO:0005515
Vvi4g501 1683 PANTHER TRAF-LIKE FAMILY PROTEIN 34 1682 - -
Vvi4g501 1683 MobiDBLite consensus disorder prediction 1 32 - -
Vvi4g501 1683 ProSiteProfiles MATH/TRAF domain profile. 235 371 IPR002083 GO:0005515
Vvi4g501 1683 Pfam MATH domain 583 691 IPR002083 GO:0005515
Vvi4g501 1683 Pfam MATH domain 435 541 IPR002083 GO:0005515
Vvi4g501 1683 Pfam MATH domain 77 201 IPR002083 GO:0005515
Vvi4g501 1683 MobiDBLite consensus disorder prediction 1 61 - -
Vvi4g501 1683 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 231 377 IPR008974 GO:0005515
Vvi4g501 1683 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 55 206 IPR008974 GO:0005515
Vvi4g501 1683 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 396 548 IPR008974 GO:0005515
Vvi4g501 1683 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 556 697 IPR008974 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g501 - - - vvi:100259525 3222.57
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g501 Vvi11g524 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g501 . . . Bda03g00075 . . Bma04g00072 . . . Cma01g01513 . Car09g00391 . . . Cpe06g00327 . . . . . . . Cla05g01725 Cam05g1838 Cec05g1852 Cco05g1909 Clacu05g1825 Cmu05g1709 Cre05g1840 . . Cone17ag1011 . Lsi04g02117 Csa03g04321 Chy04g00379 . . . . . . Bpe04g00061 . . Sed05g1711 Cmo01g01566 Cmo09g00453 Cma09g00443 . . . . Cpe02g00443 Bhi09g02224 Tan01g3626 Cmetu04g2170 . Hepe01g2009 Mch11g0545 . . . . . . . . . . . Cme04g00422
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007058 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 2 37