Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g503 ATGGAGACTAACTATGGAACGCTTGTTTCGCTCCTTTCTTGTCTGTGCGTTGCGTCGGTGGTTGTGGTTTGCATAGTTTCGGGCCATTATAGTCAGTCCATAAAGTTTTCAGGTGCCGAACCAGGAGATTCAGTGGCCACGATCGAGTTGCAGACCAAGGTCACTGCCTCTCATGAGGTCCGAGCTGTTTTCTCCTCTCAACCTCCTGCTTTTTACGTCAATCGACTCAGAAACCATACTCTCATTAGAAAAATCAAGAAACGGACAAGATATCAAGGGCAGGAAGAAGGACTCGCTCGAGCGCGTGCTTCAATTCGCAAGGCGTTCTCGAATCTAAACCGATCGTCGGAGATCGGCGGAGAAGATAATAATGAGGTCCCCACCGGTGACGTGTATCGTAACGCCGGCGCATTTTATCAGAGCTACGTGGAGATGGAGAAAAGGTTGAAGGTGTACGTGTATGAAGAAGGGGAGGTGCCCATGATCCACGATGGACCGTGTAAGGACATATATACGATAGAAGGAAGGTTCATACACGAGATCGAGCATGGAGATGGGAAGTTCAGAACCAGAGATGCTGAGCGTGCTCACGTTTATTTCATGCCCTTCAGTGTTACGTGGATGGTGAAGTACCTCTACAAGCCTCTCACCTACAACCTCACTCCCCTTCGACAATTCGTGTCTGATTACGTGAGCGTCATCTCTACCAAGTACCCCTTTTGGAATACAACCCAAGGGGCTGATCACTTCATGCTTGCCTGTCATGATTGGGGTCCTCACGCATCACGGGGCCACCCAGTTCTATACAACACATCAATCCGGGTGTTATGCAATGCCAACACCTCCGAAGGGTTCAACCCCCAAAAGGACGTGAGCTTGCCCGAAATCCACCTCTACGGTGGCAACGTAAACCCCAAGCTCCTCTCCCCTCCACCCCCCAACAGCCCACGTCCATTTTTGGCATTCTTTGCTGGTGGGCTTCACGGCCCAATTAGGCCCATCCTCATCCAACACTGGATGGGCCGTGACACTGACCTCCGCGTCTATGAATACCTCCCCAAGGACATGGACTACTACTCGCTCATGCTCCAATCCAAGTACTGCTTGTGCCCCAGCGGCCACGAGGTGGCCAGCCCCAGAATAGTCGAGGCCATTTACTCCGAGTGTGTTCCTGTGATACTCTCCGATCACTATGTTTTGCCATTCAGCGATGTGTTGAGATGGGAAGCATTCTCTGTTAAGGTGGAGGCATCGGAGATCCCGAGGTTAAAGGAGGTGCTGCAAGCAATATCTGAGGAAAAGTATACGAGGCTCAAGGAGGGTGTGAGAGCTGTTAGGAGACATTTTGAGCTGAACCAGCCTGCCAAGAGATTTGATGTGTTTCACATGATTCTACATTCTGTTTGGCTGAGGAGAATAAACCTAAAACTTGGTTAG 1437 50.38 METNYGTLVSLLSCLCVASVVVVCIVSGHYSQSIKFSGAEPGDSVATIELQTKVTASHEVRAVFSSQPPAFYVNRLRNHTLIRKIKKRTRYQGQEEGLARARASIRKAFSNLNRSSEIGGEDNNEVPTGDVYRNAGAFYQSYVEMEKRLKVYVYEEGEVPMIHDGPCKDIYTIEGRFIHEIEHGDGKFRTRDAERAHVYFMPFSVTWMVKYLYKPLTYNLTPLRQFVSDYVSVISTKYPFWNTTQGADHFMLACHDWGPHASRGHPVLYNTSIRVLCNANTSEGFNPQKDVSLPEIHLYGGNVNPKLLSPPPPNSPRPFLAFFAGGLHGPIRPILIQHWMGRDTDLRVYEYLPKDMDYYSLMLQSKYCLCPSGHEVASPRIVEAIYSECVPVILSDHYVLPFSDVLRWEAFSVKVEASEIPRLKEVLQAISEEKYTRLKEGVRAVRRHFELNQPAKRFDVFHMILHSVWLRRINLKLG* 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5206352 5210218 - Vvi4g503 Vvi4g503 785282

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g503 478 Pfam Exostosin family 146 430 IPR040911 -
Vvi4g503 478 PANTHER XYLOGALACTURONAN BETA-1,3-XYLOSYLTRANSFERASE 72 476 - -
Vvi4g503 478 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 72 476 IPR004263 GO:0006486|GO:0016757
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g503 - - - vvi:100252473 944.11
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g503 Vvi11g529 ECH
Vvi4g503 Vvi11g530 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g503 Blo01g01393 . . . . Bpe02g00556 . . Cmo05g00377 . . Cma05g00375 . . Sed01g1382 . . Bhi04g00016 Tan02g2733 Cmetu03g0444 . Hepe10g0241 . Lcy13g1800 . . . . . . . Cone4ag1775 Cone7ag1691 . . . . . Cme03g01604 . . . . . . . . . . . . . . Car05g00319 Cpe11g00321 . . . . . . . . Cla08g01344 Cam08g1807 Cec08g1386 Cco08g1515 Clacu08g1500 . Cre08g1287 Lsi08g01216 . Chy03g01109 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012011 0 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30