Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g506 ATGTCGTTTTTCTTCGGCATTGTTATCGGTATCGCCTGCGGCATTGCGGTTGTTGTCGTTTTCGCTCGTTTGGCCAATCTCCGATCCAAGTCTCGATGCGACTTGGCGACAACTGTGGCTGCGTTCGCGAGAATGACAGTGCAAGATTCCAGGAAAATTCTTCCTCCCCAGTTCTACCCATCTTGGGTCGTCTTTTCTCAGCAACAGAAGTTGAGTTATATGAATGGATGTTTAACTTGGCTGAATTCTCATCTTAGAAAGATATGGCCATATGTTGATGAGGCAGCTTCTGAATTGATAAGGAGTAATGTGGAGCCGATTCTTGAACAATATAGGCCCGTTATCTTGTCAGCTCTCAAGTTTTCGAAATTGACACTGGGGACTGTGGCTCCCCAATTTACAGGAGTTTCTATCCTTGAAGGTGAAGCAGGGGAAGTTTCTATGGAGTTGGAAATGCAGTGGGATGGAAACCCAAATATTGTACTTGATATTAAGACGAGAGTGGGTGTGGGACTACCTGTACAGGTAAAAAACATTGGATTCACTGGGGTTTTCCGGTTAATTTTCAAACCAATGGTTGAAGAGTTTCCGTGTTTTGGAGCTGTTTGTTATTCCTTGAGAGAAAAGAAAAACCTGGATTTTAAACTTAAAGTTGTTGGTGGTGATATAACAGCACTCCCAGGGATTTCTGATGCTATTGAGGAAACAATACTAGATGCTATTGAAGATTCTATAACATGGCCTGTTCGAAAAATTGTCCCCATAATACCTGGAGATTACAGTGACCTGGAGTTGAAGCCTGTTGGAACATTAGAGGTGAAGCTTGTGCAAGCCAGGGACTTAACAAATAAAGACCTGATTGGGAAATCTGATCCCTATGCTGTGTTATTTGTTCGTCCAATACGTGACAGAATGAAAACAAGCAAAACAATAAATAACGAACTGAATCCAATTTGGAATGAGCATTTCGAGTTCATAGTAGAAGATGCATCGACCCAACACTTGACAGTAAGAATTTTTGATGATGAAGGTGTTCAAGCTTCTGAACTCATTGGTTGTGCTCAAGTGCGGTTAAAGGACCTTGAGCCTGGTAAGGTGAAGGATGTCTGGTTGAAACTGGTCAAAGATTTGGATGTCCAAAGAGATAAGAAATACAGGGGGGAGGTCCGCTTGGAGCTATTGTACTGTCCTTTTGGCATGGAGAGTGTATTTACAAATCCATTCAGGCCCAATTTATTGACCTCCTTAGAGAAAGTCCTTAAAGCGGATGGAACAGAGGCTGATGATATTAAAAAATCACACTCGCTCAAGAAAAGGGATATTATTGTGAGGGGAGTCCTCTCTGTGACAGTAATATCTGCAGAAAACTTACCAGTTGTAGACCTAATAGGAAAGGCCGATCCCTATGTCGAGCTTACAATGAAGAAATCCAATACAAAACACAGAACTAGGGTTGTAAATAACAGCCTGAATCCAATTTGGAATCAAACATTTGACTTTGTTGTGGAAGATGGGTTACATGATATGTTAATTCTGGACGTCTGGGATCATGACACTTTTGGGAAGGATAAAATTGGGAGATGCATCTTCACGCTCACTAGAGTCATATTAGAAGGGGAGTTCAGAGATAACTTTCCCCTCGAAGGGGCTAAGTCAGGAAGCCTGAATTTACATCTCAAGTGGAGCCCCCAGCCAATATTCCGGGATACTTGA 1713 42.09 MSFFFGIVIGIACGIAVVVVFARLANLRSKSRCDLATTVAAFARMTVQDSRKILPPQFYPSWVVFSQQQKLSYMNGCLTWLNSHLRKIWPYVDEAASELIRSNVEPILEQYRPVILSALKFSKLTLGTVAPQFTGVSILEGEAGEVSMELEMQWDGNPNIVLDIKTRVGVGLPVQVKNIGFTGVFRLIFKPMVEEFPCFGAVCYSLREKKNLDFKLKVVGGDITALPGISDAIEETILDAIEDSITWPVRKIVPIIPGDYSDLELKPVGTLEVKLVQARDLTNKDLIGKSDPYAVLFVRPIRDRMKTSKTINNELNPIWNEHFEFIVEDASTQHLTVRIFDDEGVQASELIGCAQVRLKDLEPGKVKDVWLKLVKDLDVQRDKKYRGEVRLELLYCPFGMESVFTNPFRPNLLTSLEKVLKADGTEADDIKKSHSLKKRDIIVRGVLSVTVISAENLPVVDLIGKADPYVELTMKKSNTKHRTRVVNNSLNPIWNQTFDFVVEDGLHDMLILDVWDHDTFGKDKIGRCIFTLTRVILEGEFRDNFPLEGAKSGSLNLHLKWSPQPIFRDT* 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5239402 5245891 + Vvi4g506 Vvi4g506 785285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g506 570 SMART C2_3c 270 370 IPR000008 -
Vvi4g506 570 SMART C2_3c 446 544 IPR000008 -
Vvi4g506 570 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 569 IPR045050 GO:0008289
Vvi4g506 570 PRINTS C2 domain signature 462 474 IPR000008 -
Vvi4g506 570 PRINTS C2 domain signature 488 501 IPR000008 -
Vvi4g506 570 PRINTS C2 domain signature 510 518 IPR000008 -
Vvi4g506 570 ProSiteProfiles C2 domain profile. 426 545 IPR000008 -
Vvi4g506 570 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 442 564 IPR035892 -
Vvi4g506 570 Gene3D C2 domain 262 397 IPR035892 -
Vvi4g506 570 Gene3D C2 domain 428 563 IPR035892 -
Vvi4g506 570 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 267 399 IPR035892 -
Vvi4g506 570 CDD C2 447 543 - -
Vvi4g506 570 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 74 256 IPR031468 GO:0008289
Vvi4g506 570 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 79 256 IPR039010 -
Vvi4g506 570 ProSiteProfiles C2 domain profile. 250 371 IPR000008 -
Vvi4g506 570 Pfam C2 domain 445 543 IPR000008 -
Vvi4g506 570 Pfam C2 domain 269 373 IPR000008 -
Vvi4g506 570 PANTHER SYNAPTOTAGMIN-4 1 569 - -
Vvi4g506 570 CDD C2 271 373 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g506 - - - vri:117912419 1086.25
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g506 Vvi11g545 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g506 . Blo12g01070 . . . . Bma04g00074 . . . Cma01g01516 . Car09g00389 . . . Cpe06g00325 . . . . . . . Cla05g01721 . Cec05g1847 Cco05g1905 Clacu05g1821 Cmu05g1705 Cre05g1836 Cone4ag1772 . . . Lsi04g02114 Csa03g04318 Chy04g00382 . . . . . . Bpe04g00063 . . Sed13g2010 Cmo01g01569 Cmo09g00449 Cma09g00440 . . . . Cpe02g00441 Bhi09g02220 Tan01g3623 Cmetu04g2724 . Hepe01g2006 Mch11g0542 . . . . . . . . . . . Cme04g00428
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001676 3 3 3 2 3 2 4 2 2 2 2 2 3 2 2 4 2 3 3 2 2 1 2 2 2 2 2 2 2 2 70