Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g507 ATGATGGCTGCTCTTGATGGCGGTATCCGCAACCACAAGGTTGAAGTTCTTAAAATAGAGTTGGAGCGTTTGAGGAAAGAAAATGAAGATCTTCGGCTTGGTCTAGAAATTATGGGTAGTAAATATGAAGTTCTTCAAGCTCATCTTCAGAAGAATATGGCCACCATTTCACCTGATCATGGATCAAGCCAAGACTCAAACAAGAGGCCGAGGACCGAAGAAGTTTCGGTAGCCAAGGCATCACAAGTGTTTGTGAGAACCAATCCAAAAGACAAAAGCTTAACAGTGAAAGATGGATTTCAATGGAGGAAATATGGGCAGAAGATTACCAAGGATAATCCATCTCCTCGAGCTTACTTCAGATGTTCCATGGCTCCACAATGCCCAGTGAAAAAGAAGGTGCAGAGATGCATGGAGGATAGCTCAATTCTGGTTGCAACCTATGAAGGAGCACACAACCATGAACCACCTCATGATGCACCAGCAGGTGGTTCCTCATATTCACCAGATAGCCCAATCAAGGGCTTGGTGGCTAATTTCCCATGTCCAACCACAGTAGATCCATTTCAACCTACTGTTACCCTCGATCTAACTCTTTCCGGGACCGGGACCGGGACGGGTCAGGAGAAGAGAAGGCCTCAAAATTTTATGGAAGATTACCGGAAGAGCAACTGTGGCAGAGTTGAAGAATATGTGGCATCCTTAACTAAAGATACTAACTTCACCCTTGCTTTGGCTGCTGCGGTCGCACGATCCATCACCGACCAGCCTAAACCAACAAAAGCTTGA 789 45.63 MMAALDGGIRNHKVEVLKIELERLRKENEDLRLGLEIMGSKYEVLQAHLQKNMATISPDHGSSQDSNKRPRTEEVSVAKASQVFVRTNPKDKSLTVKDGFQWRKYGQKITKDNPSPRAYFRCSMAPQCPVKKKVQRCMEDSSILVATYEGAHNHEPPHDAPAGGSSYSPDSPIKGLVANFPCPTTVDPFQPTVTLDLTLSGTGTGTGQEKRRPQNFMEDYRKSNCGRVEEYVASLTKDTNFTLALAAAVARSITDQPKPTKA* 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5247591 5248886 - Vvi4g507 Vvi4g507 785286

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g507 262 Pfam WRKY DNA -binding domain 97 155 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g507 262 MobiDBLite consensus disorder prediction 151 170 - -
Vvi4g507 262 Gene3D WRKY domain 79 158 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi4g507 262 Coils Coil 14 34 - -
Vvi4g507 262 MobiDBLite consensus disorder prediction 54 77 - -
Vvi4g507 262 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 9 253 IPR044810 GO:0003700
Vvi4g507 262 ProSiteProfiles WRKY domain profile. 98 157 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g507 262 SUPERFAMILY WRKY DNA-binding domain 93 157 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi4g507 262 PANTHER WRKY TRANSCRIPTION FACTOR 49 9 253 - -
Vvi4g507 262 SMART WRKY_cls 96 156 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g507 - - - vvi:100266177 518.85
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g507 . . . . . . . . . . . . . . Sed11g1143 . . Bhi04g00046 Tan02g2760 Cmetu03g1247 . Hepe10g0218 . Lcy13g1831 . . . . . . . . . . . . . . . . . . . . . . . Sed05g1739 . . . . . . . . Bhi09g03003 Tan01g3569 . . Hepe01g1969 Mch11g0506 . . . . . . . . . . . Cme07g00117
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015541 0 1 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 1 1 0 1 0 1 1 0 0 1 10
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14757 PF03106 WRKY 1.70E-23 CL0274 Vvi TF