Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g508 ATGGAATTCGAATTTATTGATACTTCTCTTGGTTTGGACCTCAAGCCTAATCCTCCTGCGAACAGCCTTGGCGACTTCTCTCCTAAGAGAGGAGATTGTGTGGATGTGGATGTGGAAAGGAAACCCTCTCCAGTATTGAAAGAAGACACTGGTGGTTTGGTAGAAGAGTTGCGTAGGATGAGCACTGAGAACAAGAAGCTAACTGAATTGCTATCAATCATGTGTGAGAATTACAATGCTTTGCACAATCACTTGAAGGAATTGATGAGAAAGAACTCTGATCATCAGCTCTTTAATTCAAGGAAGAGGAAGGCTGAAAGTGAGGATAATATCAATAATATTCATGGGAGTAGTGGAAATAATACTGAGAGTATCTCTAGTGATGAAGATTCAAGTAAGAAGCCAAGAGAAAGCACCAAGGGAAAGGTCTCTAGAGTTGTTGTAAAGACAGAGAAGTCTGACAATAGCCTGCTTCTGAAGGACGGATACCAATGGAGAAAGTATGGGCAGAAGGTCACCAGAGATAACCCTTCTCCCAGAGCCTACTTCAAGTGCTCCTTTGCCCCAACCTGCCCTGTCAAAAAGAAGGTGCAAAGAAGTGCTGAAGATCAGTCTCTTCTGATAGCCACTTATGAGGGGGAGCATAACCACCAGCAACCTTCACCAGTTGAGGTGTCATTAGGCTTCAACCGAGCTGCCACTCCTGCTTCAGTCCTCAGCCCAGCCTCCATGCCAATAGTCCAGCAGTTCTTAGTCGAACAAATGGCTTCTTCCTTGACAAGAGATCCCAGTTTCACTGCAGCCCTTGCAGCAGCCATTTCCGGAAGAATTTTAGACCAAACTCAGATAGAAAAATGGTGA 861 44.6 MEFEFIDTSLGLDLKPNPPANSLGDFSPKRGDCVDVDVERKPSPVLKEDTGGLVEELRRMSTENKKLTELLSIMCENYNALHNHLKELMRKNSDHQLFNSRKRKAESEDNINNIHGSSGNNTESISSDEDSSKKPRESTKGKVSRVVVKTEKSDNSLLLKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPTCPVKKKVQRSAEDQSLLIATYEGEHNHQQPSPVEVSLGFNRAATPASVLSPASMPIVQQFLVEQMASSLTRDPSFTAALAAAISGRILDQTQIEKW* 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5265805 5268041 - Vvi4g508 Vvi4g508 785287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g508 286 SUPERFAMILY WRKY DNA-binding domain 156 220 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi4g508 286 MobiDBLite consensus disorder prediction 127 147 - -
Vvi4g508 286 Pfam WRKY DNA -binding domain 160 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g508 286 MobiDBLite consensus disorder prediction 96 147 - -
Vvi4g508 286 Gene3D WRKY domain 142 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi4g508 286 MobiDBLite consensus disorder prediction 96 110 - -
Vvi4g508 286 PANTHER WRKY TRANSCRIPTION FACTOR 40-RELATED 1 280 - -
Vvi4g508 286 MobiDBLite consensus disorder prediction 111 126 - -
Vvi4g508 286 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 280 IPR044810 GO:0003700
Vvi4g508 286 ProSiteProfiles WRKY domain profile. 154 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g508 286 SMART WRKY_cls 159 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g508 Vvi9g847 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14758 PF03106 WRKY 1.80E-23 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g508 - - vvi:100264507 536.569