Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g509 ATGGAGGAAGAAGAAATAGAGAAGGCAGTGATAGCGTACCTGAAGAAGAAGGGGTTCAAGCAAACAGAGCTAGCTTTTCAAGAGGAGCATCATCAGCATCAAAATCAACAAACCAAGAACTCATCTTCCTCTATCTCATCCTCCACCGACCCTGATATCGCCAAGCACATTCTCTCCTTCTCCGAGTCAGAGAATATTCCAGCAAGATACCATGAGGGATATAGCAAATTAAGATCGTGGACTTATAGTTCACTAGATTTGTACAAGCATGAGTTGCTTCGAGTGCTTTATCCAGTATTTATACACTGTTTTATGGATCTTGTGGCAAAAGGGCATATTCAAGAAGCTAGGAACTTTTTCAATAGCTTTCGTGAAGACCATGAAATGATGCATTTAAGGGACCTTCAAAAGTTGGAAGGAGTTCTTTCTCCTTCACATCTGGAGGAAATGGAATTTGCTCATTCTCTGAGGCAAAGCAAAGTCAGCATAAAGATATGCCAGTACTCTTATGAGCTTTTGCTGCAATATCTACATAAGACACAATCCATCACCATGCTTGGGGTTATCAATGAGCATATTAACTTCCAAGTTTCTCCCGGACAGCCCGCCTCAATTTCTGATGACGCTGAGGTTGTGACACTTATTGGCAGCAGCCAAGATGATGCTAATCAGATCAATCAGAAAGAAATACATTGGGGGTTGCTTGAAGGGTCTTTAGAAGAACGGTTGGAGAAAGCAGGGGGTTTGCTTTCAGATTCTGAAAAAGCAGAAGGAGAAGTGAAAGAGACAGACACAGAAGAGAATAAGAAAAGATCAGCAGAAGGAGGAAAACAAGGTTCTTCAATAAAAAAGTTGAAAAAGGACAAGGTTGTTGGTGCAGCAGGAAAAACTGCGCGCCCCGAGGCTAATGCAGTATCCATGGCACCACGAGTCAAACCGGAGCTTGCTTTGCCCGTAATGCCAACAGAGGTAGAGCAGTCTATTCTTGAAGACCTGCGAAACCGTGTACAGTTGAGTAGCATGGCACTGCCATCAGTCAGCTTCTATACGTTTATCAATACACACAATAGTTTAAACTGTTCATCAATATCCCATGATGGATCTTTGGTTGCTGGTGGATTCTCAGACTCATCATTGAAGGTTTGGGACATGTCAAAGCTTGGGCAGCAAGCTGCTACTTCTATTATGCAGGGCGACAATGATTTGGCTCCTACCGAACAAATTCTTGGAACAAGTGGTGGAAAAAGATCTTATACATTATTTCAGGGTCATTCGGGTCCTGTTTATTCAGCCACTTTTAGTCCTCTTGGGGATTTTATTCTTTCCTCCTCAGCAGACTCAACAATTCGATTGTGGAGCACAAAACTAAATGCAAATCTTGTTTGCTACAAAGGTCACAACTACCCTGTTTGGGATGTTCAGTTTAGTCCTATGGGACACTATTTTGCCAGCTCTTCGCATGATCGAACAGCCAGGATTTGGTCTATGGACAGGATACAACCCTTAAGAATAATGGCAGGGCATTTGTCTGATGTTGATTGTGTACAGTGGCACATAAACTGCAACTACATTGCGACAGGCTCAAGTGACAAAACAGTTCGATTATGGGATGTACAGAGTGGGGAGTGTGTTCGCATTTTCATTGGCCACAGGAGCATGGTTCTATCTTTGGCAATGTCACCTGATGGTCAGTACATGGCATCCGGTGATGAAGACGGCACGATCATGATGTGGGATCTCTCAAGCGGTCGCTGTGTCATGCCTTTGATGGGTCATATGTCATGCGTATGGTCACTTGCTTTCAGTTGTGAAGGCTCGCTCCTCGCATCTGGGTCTGCTGATTCCACTGTAAAACTGTGGGATGTGACCACAAGCACAAAGGTGCCTAGAAGTGAAGAAAACAAAAGTGGAAACACCAGCAGGCTGAGATCATTGAAGACTTTGCCAACCAAGTCTACACCAGTGTACTCGTTGCGGTTCTCCCGGAGGAATCTTCTATTTGCAGCCGGGGCGCTCTCAAAAAGTGGGTAA 2031 44.07 MEEEEIEKAVIAYLKKKGFKQTELAFQEEHHQHQNQQTKNSSSSISSSTDPDIAKHILSFSESENIPARYHEGYSKLRSWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARNFFNSFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRQSKVSIKICQYSYELLLQYLHKTQSITMLGVINEHINFQVSPGQPASISDDAEVVTLIGSSQDDANQINQKEIHWGLLEGSLEERLEKAGGLLSDSEKAEGEVKETDTEENKKRSAEGGKQGSSIKKLKKDKVVGAAGKTARPEANAVSMAPRVKPELALPVMPTEVEQSILEDLRNRVQLSSMALPSVSFYTFINTHNSLNCSSISHDGSLVAGGFSDSSLKVWDMSKLGQQAATSIMQGDNDLAPTEQILGTSGGKRSYTLFQGHSGPVYSATFSPLGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPMGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHINCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMVLSLAMSPDGQYMASGDEDGTIMMWDLSSGRCVMPLMGHMSCVWSLAFSCEGSLLASGSADSTVKLWDVTTSTKVPRSEENKSGNTSRLRSLKTLPTKSTPVYSLRFSRRNLLFAAGALSKSG* 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5305245 5339742 + Vvi4g509 Vvi4g509 785288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g509 676 ProSiteProfiles Trp-Asp (WD) repeats profile. 463 504 IPR001680 GO:0005515
Vvi4g509 676 ProSitePatterns Trp-Asp (WD) repeats signature. 566 580 IPR019775 -
Vvi4g509 676 PRINTS G protein beta WD-40 repeat signature 440 454 IPR020472 -
Vvi4g509 676 PRINTS G protein beta WD-40 repeat signature 524 538 IPR020472 -
Vvi4g509 676 PRINTS G protein beta WD-40 repeat signature 608 622 IPR020472 -
Vvi4g509 676 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 421 453 - -
Vvi4g509 676 Pfam WD40 associated region in TFIID subunit, NTD2 domain 65 193 IPR007582 -
Vvi4g509 676 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 463 497 - -
Vvi4g509 676 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 1 675 IPR037783 -
Vvi4g509 676 ProSitePatterns Trp-Asp (WD) repeats signature. 608 622 IPR019775 -
Vvi4g509 676 PANTHER CANNONBALL-RELATED 1 675 - -
Vvi4g509 676 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 589 624 - -
Vvi4g509 676 SUPERFAMILY WD40 repeat-like 344 672 IPR036322 GO:0005515
Vvi4g509 676 ProSiteProfiles LIS1 homology (LisH) motif profile. 2 34 IPR006594 GO:0005515
Vvi4g509 676 Gene3D TFIID subunit TAF5, NTD2 domain 49 198 IPR037264 -
Vvi4g509 676 MobiDBLite consensus disorder prediction 25 50 - -
Vvi4g509 676 CDD TAF5_NTD2 67 199 IPR007582 -
Vvi4g509 676 ProSiteProfiles Trp-Asp (WD) repeats profile. 351 385 IPR001680 GO:0005515
Vvi4g509 676 ProSiteProfiles Trp-Asp (WD) repeats profile. 421 453 IPR001680 GO:0005515
Vvi4g509 676 ProSiteProfiles Trp-Asp (WD) repeats profile. 505 546 IPR001680 GO:0005515
Vvi4g509 676 Gene3D - 217 500 IPR015943 GO:0005515
Vvi4g509 676 ProSiteProfiles Trp-Asp (WD) repeats profile. 547 588 IPR001680 GO:0005515
Vvi4g509 676 MobiDBLite consensus disorder prediction 247 294 - -
Vvi4g509 676 ProSitePatterns Trp-Asp (WD) repeats signature. 524 538 IPR019775 -
Vvi4g509 676 MobiDBLite consensus disorder prediction 36 50 - -
Vvi4g509 676 MobiDBLite consensus disorder prediction 247 298 - -
Vvi4g509 676 SMART WD40_4 413 453 IPR001680 GO:0005515
Vvi4g509 676 SMART WD40_4 456 495 IPR001680 GO:0005515
Vvi4g509 676 SMART WD40_4 344 383 IPR001680 GO:0005515
Vvi4g509 676 SMART WD40_4 582 621 IPR001680 GO:0005515
Vvi4g509 676 SMART WD40_4 498 537 IPR001680 GO:0005515
Vvi4g509 676 SMART WD40_4 540 579 IPR001680 GO:0005515
Vvi4g509 676 SUPERFAMILY Taf5 N-terminal domain-like 56 198 IPR037264 -
Vvi4g509 676 Gene3D - 501 581 IPR015943 GO:0005515
Vvi4g509 676 CDD WD40 421 671 - -
Vvi4g509 676 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 547 584 - -
Vvi4g509 676 ProSiteProfiles Trp-Asp (WD) repeats profile. 589 630 IPR001680 GO:0005515
Vvi4g509 676 Gene3D - 582 675 IPR015943 GO:0005515
Vvi4g509 676 ProSitePatterns Trp-Asp (WD) repeats signature. 370 384 IPR019775 -
Vvi4g509 676 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 505 542 - -
Vvi4g509 676 Pfam WD domain, G-beta repeat 353 383 IPR001680 GO:0005515
Vvi4g509 676 Pfam WD domain, G-beta repeat 500 537 IPR001680 GO:0005515
Vvi4g509 676 Pfam WD domain, G-beta repeat 541 579 IPR001680 GO:0005515
Vvi4g509 676 Pfam WD domain, G-beta repeat 421 453 IPR001680 GO:0005515
Vvi4g509 676 Pfam WD domain, G-beta repeat 583 621 IPR001680 GO:0005515
Vvi4g509 676 Pfam WD domain, G-beta repeat 460 495 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g509 K03130 TAF5; transcription initiation factor TFIID subunit 5 - vvi:100254222 1309.28
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g509 . . Bda01g00765 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed02g0871 . . . . . . . . Bhi09g03000 Tan01g3572 Cmetu07g0650 . Hepe01g1970 Mch11g0508 . . . . . . . . . . . Cme07g00115
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010521 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32