Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g51 ATGAATGACACAGAGCTTCTCTGGAGGGCATCTTTTGCCCCTAAGGTGAAGAAGTACCCATTTCAGAGAGTTCCAAAGGTTGCATTCATGTTCTTGACTAAGGGCCCATTGCCGCTGGGACCTCTCTGGGAGAGGTTTTTGAAGGGGCATGAAGGGCTTTATTCAATCTACATTCATTCGACGCCATCATTCCAGGCCAATTTCCCTGCCTCATCGGTTTTCTATAGGAGACAGATACCAAGCAAGGTGGCAGAGTGGGGGAGGATGAGTATGTGTGATGCAGAGAGAAGGCTCCTCGCAAATGCATTGCTTGATATCTCCAATGAACGCTTCATGGGTGCATTTGATGACCCTGGGCCATATGGAAGGGGTCGGTATAATGGGAATATGAAACCTGAGGTGAGCATTTCCCAGTGGCGTAAAGGAGCCCAATGGTTTGAAGTTAACCGAAAACTTGCAGTCAACATAGTAGAAGATACCACGTTCTACAAGAAGTTTGAGGAGTTCTGCAAACCAGCATGCTATGTGGATGAGCACTACTTCCCCACCATGCTAACCATTCAATCAGGACACCTTATAGCAAACAGAAGCATTACTTGGGTCGATTGGTCAAGAGGCGGTGCTCACCCTGCTACCTTTGGGAAAGCAGATATCACAGAGGAGTTTCTACACAGAGTTGTCAGCAATCACAAGTGCCTCTACAACAATCAGCCTTCCTCTACTTGTTTTCTTTTTGCAAGAAAGTTTGCTCCCAGTACCCTGGAACCTCTGTTACAGTTGGCACACAAACACTTAGGGTTTTGA 804 46.77 MNDTELLWRASFAPKVKKYPFQRVPKVAFMFLTKGPLPLGPLWERFLKGHEGLYSIYIHSTPSFQANFPASSVFYRRQIPSKVAEWGRMSMCDAERRLLANALLDISNERFMGAFDDPGPYGRGRYNGNMKPEVSISQWRKGAQWFEVNRKLAVNIVEDTTFYKKFEEFCKPACYVDEHYFPTMLTIQSGHLIANRSITWVDWSRGGAHPATFGKADITEEFLHRVVSNHKCLYNNQPSSTCFLFARKFAPSTLEPLLQLAHKHLGF* 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 622696 627431 + Vvi4g51 Vvi4g51 784830

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g51 267 Pfam Core-2/I-Branching enzyme 111 226 IPR003406 GO:0016020|GO:0016757
Vvi4g51 267 PANTHER - 1 111 - -
Vvi4g51 267 PANTHER - 110 265 - -
Vvi4g51 267 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 1 111 IPR044174 GO:0016757
Vvi4g51 267 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 110 265 IPR044174 GO:0016757
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g51 - - - vvi:100249300 550.051
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g51 Vvi9g215 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g51 . Blo12g01006 . Bda03g00151 . Bpe02g00478 . Bma01g02224 . . Cma01g01750 . Car09g00275 . . . Cpe06g00231 . . . . . . . Cla05g01814 Cam05g1938 Cec05g1951 Cco05g2012 Clacu05g1930 Cmu05g1812 Cre05g1938 Cone4ag1647 . . . Lsi04g01440 . . . . . Bda01g00970 . . Bpe04g00134 . . Sed11g1846 Cmo01g01759 Cmo09g00325 Cma09g00327 . Car01g01361 . . Cpe02g00248 Bhi09g03176 Tan01g4649 Cmetu07g0345 . Hepe01g1863 Mch11g0398 . . . . . . . . . . . Cme07g00243
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007702 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36