Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g511 ATGGCGTCCACGGACGGAGAGCTTGAGAAACAGCTCATGGAAGCTGGGAACAAGCTTTTGGTGCCCCCGGCTTCTGTCGACGAACTTCTCCCGCTGCTTGACCAAGTTGAGAATTGTCTTTTAAAGGTGGAACAGTCGCCTTCCATGTCGATGCAAAATGCCCTTTCAGCATCGCTGAAGGCGTTGGTGACAGATCAACTTCTGAGACATTCTGATATTGATGTGAAAGTGGCAGTTGCAGCTTGCATCAGTGAAATTACAAGAATTACTGCACCAGATGCCCCATATGATGATGACCAAATGAAGGAGATCTTTCAGTTGATTGTATCATCATTTGAAAAATTATCTGACAGATCGAGCCGATCATATGATAAGAGGACCTCGATTCTTGAAACTGTTGCAAAGGTCAGGTCTTGCGTGGTAATGCTGGATCTTGAGTGTGATGCACTGATTATTGAAATGTTCCAGCATTTCCTCAATGCAATAAGGGATGATCATCCAGAAAATGTCTTTACATCCATGGAGACAATTATGACCCTTGTCTTAGAAGAAAGTGAAGACATTCCAACAGAGCTACTCTCTCCTATCTTGGCTAGCATAAAGAAGGACAATCAGGAGGTCCTGCCCATTGCTCGGAAACTGGGGGAGAAAGTTTTTGAAAACTGTGCTAATAAGCTTAAACCTTGCCTGATGCAAGCAGTAAAATCCTTGGGCATTTCTTTAGATGATTACAGCAAGGTAGTTTCTTCTATATGCCAAGGAACATCTAGTACTGCTGATCAGAATGATGACGGTGTTCCAGAGCAGAATGATGACAGTGGTCCACAGCAGAATGATGATAGTGCTCCAGAGCAGAAAGATGACAACATTGCTGGCAAAAATACAGTTGAAGAGAGCCAGTTGTTAAGGGCATCTTCGGATGAGGCAGCCCAGGTAGATAAAGAGATTTCAATTGAAGCAGCCTGTCCTGGAGAAGCAGATCCAGCAATGGATAGATCTCCTAAGTCAGTTATGAGCAATGGCATCAAACAGGCTGCGAATGATGACTCTTTAGTGGATTCAAACTCTTCAAAGAAGCCTGATTATGGTACTAATCAGTCCAAAAGTAGCAAAGTACCAAGTGAGGTTGAACTTGATAGTTTGGATGTTGGAAAGGTAGAACAAGAATCTAAGCCAGAACAAACTACTAAGAAAAGAGGAAGAAAGCCAAATGCTTCAATGAATTTGATAGAACCTTCTGATTCTCGTGTTAGCAGTGAGGAGGAGTCTGAGAAACTGTCAGACCATAAAAAAAATCAAAGCAAGGCAGGTCATGATGCCCCTTGTGAGGACCCTCCATCTATGGAGGCAGCTGTGCCTTCAGAAAATGAAAAGATGACTGCTACTCAGCTTTCCTCACCAAAGGCATTGGAGAATGAGTCTTCATATGTTGCTTCTCCATCTCCAAGCCGGAGCCTACCTGATGAGAGTCATGTTAGGAAGGTTGGACGTCCAAGGAAGAAAGACAACTTGAATCAGGAAGTGGGGAAAAGGCGACCTGGGAAAAGGGCAAGTTCTGGGATTACTGAGGAGGATAAAACTTCGGCCACCATGACTGACTCAGTGGAAAACCCACTGAAGAAGTCGGGTAAGAAAGTGGACACAAGCAAGAATGAGGATGGATCCTCTTTAAAGCCTCAGGAAGATAGGAAAAAACGGGGGCGTGGTAAAGCTGTTTTGGAGAAAGAAATGACAAAATTCTTGTCTAAAGATGATGAAAAAGAAATGCTTTCTTCCCCAAAGTCTGCTGGAAAATCAGTAAAAGATGAAAGTCATTTAGAGGAAACCCCTAAGATGCTTTCTAAGGGAAAGCATACTTCTGGAAAGCGGAAAGCATCTGATACTGTAGATTTTGGTGAGAATCTGGTTGGTTCGAGGATTAAAGTTTGGTGGCCGAAAGATCAAATGTATTATGAAGGTGTTATTGATTCTTTTGATTCTGAGAAAAAGAAGCATAAGGTTCTGTATGTTGATGGTGATGAAGAGATACTAAATCTGAAAAAGGAAAAGTTTGATTTCGTCACTATGTCGGATGGGGAAGAAGCAACTCAGACTCCAAGTCTGGATGGCTCTGAAATGCGTCAGAAGAAGAAAGCAAAGTTTTCTGATGTGCCATCTAAGCAAGGAAAGATGGATGCTTCACCTAAAAAGGGTGGAGGAGCTTCCTCCAGCAAATCCAAAGTTTCAGTCACAAAATCCGGTCGGAAATCCAGAGACAGTGGTAAAATTGATGGAAAATCCAAGGAGGACAGCTCGAAGAATGTTGGTAAATCTGACGATGAAAACAGTGGTAATCGCAAGGATCAAAAGCTTAAAGGTGGTGGTAAATTAATATATGATTCTCCCAAAACAGCCAGCAAATCCAAGGATCAAGATGCTAATGTACCCAAGATGACTGGCAAATCCAAGCAAGACAGCTCAAAAACTGTCTCCAAATCCAAGAGTCAACCACTCAAAAGTGGTAGCAGATCTAATGCTAATGGTAGTAGCAAGGGGAAATCCAGTTCGGCTAAAGGGAAAGAAACTGTGGATGTGAAGGAGAAATCTCCAGATTCCGGGAAATCATTTGAAAGTGCCAAAGGAAAATCACAAGAAACATTGAAGGAGCAGGAAAGTGAGACAAAGAGTGGAAAGAAGCGGCGAAGAGCAGTGAAGAGCTAA 2700 42.7 MASTDGELEKQLMEAGNKLLVPPASVDELLPLLDQVENCLLKVEQSPSMSMQNALSASLKALVTDQLLRHSDIDVKVAVAACISEITRITAPDAPYDDDQMKEIFQLIVSSFEKLSDRSSRSYDKRTSILETVAKVRSCVVMLDLECDALIIEMFQHFLNAIRDDHPENVFTSMETIMTLVLEESEDIPTELLSPILASIKKDNQEVLPIARKLGEKVFENCANKLKPCLMQAVKSLGISLDDYSKVVSSICQGTSSTADQNDDGVPEQNDDSGPQQNDDSAPEQKDDNIAGKNTVEESQLLRASSDEAAQVDKEISIEAACPGEADPAMDRSPKSVMSNGIKQAANDDSLVDSNSSKKPDYGTNQSKSSKVPSEVELDSLDVGKVEQESKPEQTTKKRGRKPNASMNLIEPSDSRVSSEEESEKLSDHKKNQSKAGHDAPCEDPPSMEAAVPSENEKMTATQLSSPKALENESSYVASPSPSRSLPDESHVRKVGRPRKKDNLNQEVGKRRPGKRASSGITEEDKTSATMTDSVENPLKKSGKKVDTSKNEDGSSLKPQEDRKKRGRGKAVLEKEMTKFLSKDDEKEMLSSPKSAGKSVKDESHLEETPKMLSKGKHTSGKRKASDTVDFGENLVGSRIKVWWPKDQMYYEGVIDSFDSEKKKHKVLYVDGDEEILNLKKEKFDFVTMSDGEEATQTPSLDGSEMRQKKKAKFSDVPSKQGKMDASPKKGGGASSSKSKVSVTKSGRKSRDSGKIDGKSKEDSSKNVGKSDDENSGNRKDQKLKGGGKLIYDSPKTASKSKDQDANVPKMTGKSKQDSSKTVSKSKSQPLKSGSRSNANGSSKGKSSSAKGKETVDVKEKSPDSGKSFESAKGKSQETLKEQESETKSGKKRRRAVKS* 900
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5372702 5390746 - Vvi4g511 Vvi4g511 785290

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g511 899 MobiDBLite consensus disorder prediction 874 891 - -
Vvi4g511 899 MobiDBLite consensus disorder prediction 255 292 - -
Vvi4g511 899 SUPERFAMILY ARM repeat 22 264 IPR016024 -
Vvi4g511 899 CDD TUDOR 637 681 IPR002999 -
Vvi4g511 899 MobiDBLite consensus disorder prediction 704 718 - -
Vvi4g511 899 MobiDBLite consensus disorder prediction 523 537 - -
Vvi4g511 899 PANTHER TRANSCRIPTIONAL REGULATOR 3 856 - -
Vvi4g511 899 MobiDBLite consensus disorder prediction 687 899 - -
Vvi4g511 899 MobiDBLite consensus disorder prediction 456 486 - -
Vvi4g511 899 MobiDBLite consensus disorder prediction 745 787 - -
Vvi4g511 899 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 3 856 IPR039776 GO:0007064
Vvi4g511 899 MobiDBLite consensus disorder prediction 850 868 - -
Vvi4g511 899 MobiDBLite consensus disorder prediction 538 626 - -
Vvi4g511 899 Pfam Sister chromatid cohesion protein PDS5 protein 27 232 - -
Vvi4g511 899 MobiDBLite consensus disorder prediction 487 522 - -
Vvi4g511 899 MobiDBLite consensus disorder prediction 318 626 - -
Vvi4g511 899 MobiDBLite consensus disorder prediction 415 438 - -
Vvi4g511 899 MobiDBLite consensus disorder prediction 337 374 - -
Vvi4g511 899 MobiDBLite consensus disorder prediction 378 400 - -
Vvi4g511 899 MobiDBLite consensus disorder prediction 801 849 - -
Vvi4g511 899 SUPERFAMILY Tudor/PWWP/MBT 634 676 - -
Vvi4g511 899 MobiDBLite consensus disorder prediction 255 280 - -
Vvi4g511 899 Gene3D - 632 684 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g511 - - - vvi:100260975 1679.46
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g511 . . . . . . . . . . . . . . Sed01g1394 . . Bhi04g00044 Tan02g2759 Cmetu12g0413 . Hepe10g0220 . Lcy13g1828 . . . . . . . . . . . . . . . . Blo18g00010 . Bda13g01244 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002456 2 4 2 1 1 1 2 1 1 1 1 1 2 1 2 2 1 4 2 1 1 2 2 2 2 3 1 3 1 4 54