Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g520 ATGGCATCCAGAGCCTTCCGGCTCACCAGGTCTCTCCATAGGTACCGCTCCGTACTCGGACGGGCCTGTGAACTCTCCGCTCCGGCTGCGGTCGGCCGGTCCGTCTGTGTCCCTTTGATTCGCGTTGTAGGCGGAGGCGCAGAGAATCCTGTGTTTGTGAAGTCGGTGAACAATCTCGTTGGTAATGGGTTCGGTCGCAGGTTTTATTCGTCCTATGATAACGCTAATCAGATTAATCAGTCAGAGTTCACTGAGATGGCATGGGAAGGAATGGTTGATGCTGTTGATGCGGCACGACTTAGTAAACAACAAATTGTTGAATCTGAGCATTTAATGAAAGCTCTTTTGGAGCAGAAGGATGGCTTGGCTCGGAGAATATTTACAAAGGCTGGGCTTGACAATACATCAGTTTTGCAGGCTACAGATGACTTTATAGATCAACAACCCAAGGTGGTAGGTGATACTAGTGGCCCTATATTGGGTACAAATCTCAGGTCCCTATTGGAAAAGGCAAGAAGACACAAGAAAGAAATGGGAGATAACTTCTTGTCTGTAGAGCACCTATTGTTGGGATTCCTTTCAGATGCAAGGTTTGGGCGGCAACTATTTCAGAACCTCCAGCTCAGTGAAAAAGATTTGAAAGATGCTGTCTCAGCAGTTCGTGGAAATCAGAGAGTTACTGATCAAAACCCTGAAGGAAAATACCAAGCACTGGAAAAATATGGGAATGACTTGACTGAACTTGCTAGACGTGGAAAACTAGATCCTGTAATAGGACGAGATGATGAAATTCGGCGTTGTATCCAGATATTATCTAGGAGAACAAAGAACAACCCTGTCATTATTGGTGAGCCTGGTGTTGGAAAGACTGCAATTGCTGAAGGCTTAGCTCAAAGAATTGTGCGAGGGGATGTTCCTGAACCTTTGATGAACAGAAAGTTGATTTCACTGGATATGGGTTCATTGCTTGCTGGTGCTAAGTTCCGTGGAGATTTTGAGGAAAGACTGAAAGCAGTCCTTAAGGAAGTCACCGCTTCAAATGGGCAGATTATTTTATTTATTGATGAGATCCATACTGTAGTGGGTGCAGGGGCTGTGAGTGGGGCAATGGATGCTGGGAACTTGTTGAAGCCAATGCTTGGCAGAGGTGAGCTCCGATGTATAGGGGCAACAACATTGAATGAATACAGAAAATACATTGAGAAGGATCCTGCCCTTGAGCGCAGGTTCCAGCAAGTGTTCTGTGGTCAGCCTTCAGTTGAAGACGCAATTTCCATTCTTCGTGGATTGCGTGAACGCTATGAGCTTCATCATGGTGTCAAAATATCAGACAGTGCCCTTGTATCAGCAGCAGTTCTTGCAGACCGATATATTACAGAGCGTTTTTTGCCTGACAAAGCCATTGATCTTGTGGATGAAGCGGCTGCAAAGCTGAAAATAGAGATAACTTCAAAGCCTACGGAGTTGGATGAGATAGATAGAGCTGTGATTAAACTAGAGATGGAGAAACTATCCCTGAAAAGTGACACTGATAAAGCATCCAGAGAAAGGTTAAGCAAGCTGGAAAATGATCTACTTTCACTTAAGCAGAAACAGAAAGATCTAACTGATCAATGGGAACAAGAAAAAGTTCTCATGACACGAATCCGATCTATTAAGGAGGAGATTGACAGGGTGAACCTGGAGATGGAATCTGCTGAACGTGAATATAATTTAAATCGTGCTGCTGAGCTCAAATATGGAACCTTAATTTCTCTTCAGCGGCAACTGGAAGAGGCTGAGAAGAACCTTGCTAATTATCGGAAATCCGGAAAGTCTTTGCTCCGGGAAGAAGTGACTGACCTTGATATTGCTGAAATTGTGAGTAAATGGACCGGTATACCCTTGTCAAACCTACAGCAATCAGAGAGGGACAAGTTAGTCTTGCTAGAACAAGTTCTGCACCAAAGGGTGGTTGGTCAGGAAAATGCTGTTAAATCAGTGGCTGATGCAATCCGGCGTTCAAGGGCAGGATTGTCAGACCCCATCCGGCCAATTGCAAGCTTCATGTTCATGGGTCCTACTGGGGTCGGTAAAACTGAGCTTGCAAAGGCTCTCGCAGGGTACCTTTTTAATACAGAAAATGCTCTTGTTAGAATTGACATGACTGAATACATGGAAAAGCACGCAGTCTCACGCTTGGTTGGTGCACCACCTGGTTATGTCGGATATGAAGAAGGTGGACAGCTCACCGAAGTAGTTCGCCGGAGACCTTATTCCGTGGTACTATTTGATGAGATTGAGAAGGCACATCACGATGTGTTCAACATTCTGTTACAGCTACTAGATGATGGCAGGATAACTGATTCTCAGGGAAGAACAGTTAGTTTTACAAATTGTGTAGTGATCATGACATCAAATATCGGGTCCCACTATATCCTAGAAACACTTCAGAGCACAGATAAGAAGGAAGCAGTTTATGAGATCATGAAAAAACAAGTTGTTGAGTTGGCCAGACAAACATTCCGACCAGAGTTCATGAATCGAATCGATGAATATATTGTCTTCCAGCCTTTGGACTCCAAAGAAATCAGCAAAATTGTTGAGATACAGATGAACCGACTAAGAGAGAGGCTGAAACAGAAGAAAATCGATCTCCATTACACAAAGGAGGCTGTTGAACTTTTGGGGACGCAAGGCTTTGACCCAAATTTCGGTGCAAGGCCAGTCAAGAGGGTAATACAGCAGATGGTTGAAAACGAAATAGCAATGGGAATTCTGAGAGGGGATTTCAAGGAGGACGAGTCGATTATCATCGATGCTGACATGTCAGCCAACATTCCTCCCCATAAGAGATTGCTGATCAAGAAGTTGGAGAGTAGTTCTCCCATGGACGCCATGGTTGCCTGA 2889 44.51 MASRAFRLTRSLHRYRSVLGRACELSAPAAVGRSVCVPLIRVVGGGAENPVFVKSVNNLVGNGFGRRFYSSYDNANQINQSEFTEMAWEGMVDAVDAARLSKQQIVESEHLMKALLEQKDGLARRIFTKAGLDNTSVLQATDDFIDQQPKVVGDTSGPILGTNLRSLLEKARRHKKEMGDNFLSVEHLLLGFLSDARFGRQLFQNLQLSEKDLKDAVSAVRGNQRVTDQNPEGKYQALEKYGNDLTELARRGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPEPLMNRKLISLDMGSLLAGAKFRGDFEERLKAVLKEVTASNGQIILFIDEIHTVVGAGAVSGAMDAGNLLKPMLGRGELRCIGATTLNEYRKYIEKDPALERRFQQVFCGQPSVEDAISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKIEITSKPTELDEIDRAVIKLEMEKLSLKSDTDKASRERLSKLENDLLSLKQKQKDLTDQWEQEKVLMTRIRSIKEEIDRVNLEMESAEREYNLNRAAELKYGTLISLQRQLEEAEKNLANYRKSGKSLLREEVTDLDIAEIVSKWTGIPLSNLQQSERDKLVLLEQVLHQRVVGQENAVKSVADAIRRSRAGLSDPIRPIASFMFMGPTGVGKTELAKALAGYLFNTENALVRIDMTEYMEKHAVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHHDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSTDKKEAVYEIMKKQVVELARQTFRPEFMNRIDEYIVFQPLDSKEISKIVEIQMNRLRERLKQKKIDLHYTKEAVELLGTQGFDPNFGARPVKRVIQQMVENEIAMGILRGDFKEDESIIIDADMSANIPPHKRLLIKKLESSSPMDAMVA* 963
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5486283 5510561 + Vvi4g520 Vvi4g520 785299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g520 962 Pfam C-terminal, D2-small domain, of ClpB protein 852 931 IPR019489 -
Vvi4g520 962 Gene3D - 226 419 IPR027417 -
Vvi4g520 962 SUPERFAMILY Double Clp-N motif 82 233 IPR036628 -
Vvi4g520 962 SMART AAA_5 275 419 IPR003593 -
Vvi4g520 962 SMART AAA_5 678 832 IPR003593 -
Vvi4g520 962 TIGRFAM chaperone_ClpB: ATP-dependent chaperone protein ClpB 83 935 IPR017730 GO:0005737|GO:0009408|GO:0042026
Vvi4g520 962 CDD AAA 258 418 - -
Vvi4g520 962 ProSitePatterns Chaperonins clpA/B signature 2. 712 730 IPR028299 -
Vvi4g520 962 PANTHER BNAC09G42450D PROTEIN 57 954 - -
Vvi4g520 962 PANTHER ATP-DEPENDENT CLP PROTEASE 57 954 - -
Vvi4g520 962 ProSiteProfiles Clp repeat (R) domain profile. 78 223 IPR004176 -
Vvi4g520 962 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 626 IPR027417 -
Vvi4g520 962 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 682 700 IPR001270 GO:0005524
Vvi4g520 962 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 727 745 IPR001270 GO:0005524
Vvi4g520 962 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 756 774 IPR001270 GO:0005524
Vvi4g520 962 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 789 803 IPR001270 GO:0005524
Vvi4g520 962 Pfam Clp amino terminal domain, pathogenicity island component 172 222 IPR004176 -
Vvi4g520 962 Pfam Clp amino terminal domain, pathogenicity island component 94 145 IPR004176 -
Vvi4g520 962 ProSitePatterns Chaperonins clpA/B signature 1. 371 383 IPR018368 GO:0005524
Vvi4g520 962 Gene3D - 78 225 IPR036628 -
Vvi4g520 962 Pfam ATPase family associated with various cellular activities (AAA) 281 413 IPR003959 GO:0005524|GO:0016887
Vvi4g520 962 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 627 932 IPR027417 -
Vvi4g520 962 Coils Coil 511 538 - -
Vvi4g520 962 CDD AAA 652 800 - -
Vvi4g520 962 Gene3D - 420 625 IPR027417 -
Vvi4g520 962 Coils Coil 583 610 - -
Vvi4g520 962 Coils Coil 858 878 - -
Vvi4g520 962 SMART ClpB_D2_small_2 852 948 IPR019489 -
Vvi4g520 962 Pfam AAA domain (Cdc48 subfamily) 677 845 IPR003959 GO:0005524|GO:0016887
Vvi4g520 962 Coils Coil 549 576 - -
Vvi4g520 962 Gene3D - 852 944 - -
Vvi4g520 962 Gene3D - 630 850 IPR027417 -
Vvi4g520 962 Pfam AAA lid domain 419 521 IPR041546 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g520 K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB - vvi:100247399 1845.86
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g520 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00011 . . . . . . . . . . . . . . . Bhi09g02991 Tan01g3577 . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007844 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 35