Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g521 ATGAGTAGTTTGGTTGAGAGACTACGTGTAAGGTCAGATCGAAGGCCAATTTACAATTTAGATGAATCAGATGATGACGCTGATCTTGTGCATGGGAAATCTGGCATGTCTCAGGAGAAGTTTGAAAAGATTGTTAGGAGTGATGCGAAAGATGACTCATGTCAAGCCTGTGGAGAAAGTGGGAATCTTTTGAGCTGTGAAACTTGTACTTATGCTTACCATCCCAAGTGTTTACTTCCACCACTGAAAGCTCCTCTTCCTAGCAACTGGAGGTGTCCTCAATGTGTTAGTCCTCTAAATGATATTGACAAGATACTGGACTGTGAAATGCGCCCTACTGTTGCTGGCGATAGTGATGCCTCTAAGCTGGGATCTAAGCAAATATTTGTAAAACAGTATCTTGTAAAGTGGAAGGGATTATCTTATCTGCATTGCACATGGGTGCCTGAGAAAGAGTTCATTAAAGCTTTCAAGACGCATCCTCGGTTAAAGACTAAAGTAAACAACTTTAATCGTCAAATGGCATCAAACAATAACTCTGAAGAAGACTTTGTTGCGGTTCGGCCTGAATGGACTACTGTTGATCGAATTATTGCTTGCAGGGGAAATGATGATGAGAGGGAGTATCTTGTAAAATGGAAAGAACTTTCCTATGATGAATGTTATTGGGAATTTGAATCAGACATTTCTGCATTTCAACCTGAAATCGAAAGATTTAATAAAATTCAGTCTAGGTCTCGCAAACTTTCGTCTAGTAAGCAGAAGGTTACCATTCGTGATATTAGTGACTCAAAAAGGAAACAGAGAGAATTTCAACAGTTTGAACATAGTCCTGAATTTCTTTCTGGAGGCTCACTACATCCATATCAGCTTGAAGGATTGAACTTCCTAAGGTTCTCTTGGGGCAAACAAACTCATGTAATACTTGCAGATGAGATGGGCCTGGGCAAAACTATACAAAGTATTGCCTTTTTAGCATCTCTTTTTGAAGAGAACGTCTCTCCACATTTAGTTGTAGCGCCACTTTCAACTTTGCGAAACTGGGAACGTGAATTTGCAACATGGGCACCTCAGATGAATGTTGTTATGTATGTTGGTTCTTCCCATGCTCGTTCTGTTATACGGGATTATGAATTTTACTTTCCCAAAAGTCATAAGAAGATCAAGAAAAAAAAATCTGGTCAAATTGTCACTGAAAGCAAGCAAGACAGGATAAAATTTGATGTTCTCCTGACATCTTATGAAATGATAAACTTGGATTCTGCATCATTGAAACCAATTAAGTGGGAGTGTATGATTGTTGATGAAGGTCATCGTCTCAAGAATAAGGATTCGAAGTTGTTTCTATCACTGAAGCAATATTTGAGTAAACATCGTGTGCTTTTGACAGGAACTCCTCTTCAGAACAATCTGGATGAACTTTTCATGCTCATGCACTTCCTTGATGCTGGAAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTCAAAGATATCAATCAAGAGGAGCAAATTTCAAGGCTTCATAAAATGTTGGCTCCCCATCTTCTTAGAAGAGTGAAGAAAGATGTCATGAAAGAACTGCCTCCTAAAAAGGAGCTCATTTTACGTGTTGAATTAAGTAGCAAGCAGAAAGAATATTACAAGGCCATTCTGACTCGTAACTATCAGATCCTAACTCGTCGGGGTGGTGCACAGATCTCTCTTATAAATGTGGTTATGGAATTGCGCAAGCTCTGTTGTCACCCTTATATGTTAGAAGGAGTTGAACCAGATATTGAGGATGCAACTGAAGCTTACAAACTACTGCTGGAATCTTCTGGGAAATTGCAACTGTTGGACAAAATGATGGTGAAGCTTAAAGAGCAAGGACATAGGGTTCTTATATATTCACAGTTTCAACACATGCTGGACTTACTCGAAGATTACTGTACTTATAAGAAATGGCAGTATGAACGGATTGATGGAAAGGTTGGCGGGGCGGAAAGACAAGTTCGAATAGATCGGTTTAATGCAAAGAATTCTTCAAGATTTTGTTTCTTACTTTCTACTAGAGCAGGTGGTTTGGGAATAAACCTTGCAACTGCTGACACAGTTATAATATATGACAGTGATTGGAATCCTCATGCTGATTTGCAAGCAATGGCTAGGGCTCATCGACTTGGGCAAACCAACAAGGTACTGATTTATAGACTCATAACAAGGGGGACCATTGAAGAAAGGATGATGCAAATGACTAAGAAGAAAATGGTTTTAGAGCATCTTGTTGTTGGGAGGCTCAAGGCTCAAAACATTAACCAGGAAGAGTTAGATGACATCATAAGGTACGGGTCAAAGGAGCTATTTGCTGATGAGAATGATGAAGCAGGAAAATCCCGCCAAATTCATTATGACGATGCTGCAATAGATAGATTACTTGATCGAGAACAAGTTGGGGATGAAGAGGCTACATTGGACGATGACGAAGATGATGGGTTTTTAAAAGCATTTAAGGTAGCAAATTTTGAATATATTGATGAAGTAGAAGCTGTAGTAGAAGAGGAAGTACAAAAGGCTCCTGTGGAGAACAAAGCTGCTGTCAACAATTCTGAAAGAACAAGTTATTGGGAAGAGTTATTAAGAGACAGATATGAAGTTCATAAAATTGAAGAGTTTAATGCTTTGGGCAAGGGAAAGAGAAGCCGTAAACAGATGGTATCTGTTGAAGAAGATGACCTTGCTGGTTTGGAAGATATAAGCTCTGAAGGTGAGGATGATAACTATGAAGCTGATCTGACTGATGGTGAAACAACATCAGCTGGAGTTCCATCTGGGAGAAAGCCTTACAGAAAGAAAGCTCGGGTGGACAATATGGAACCACTCCCTCTGATGGAAGGTGAAGGCAGATCATTTAGAGTACTGGGATTCAATCAAAATCAAAGGGCTGCATTTGTCCAAGTTTTGATGAGGTTTGGGGTTGGGGAGTTTGACTGGGCAGAGTTTACACCCCGCTTGAAGCAGAAAACTTTTGAAGAAATTAAAGATTATGGGACTCTCTTCTTGGCTCACATTTCTGAAGATATAACTGACTCACCAACCTTTTCAGATGGAGTTCCGAAAGAAGGACTTCGAATACCTGATGTACTTGTTAGGATTGCAGTCCTGCTTTTAGTAAGGGACAAGGTAAAACTTGCTTTAGAAAAGCCAGGGGCTCCTCTTTTCGAGGATGATATTGTATCACGCTTCCCTGGATTGAAAGGTGGAAGACATTGGAAGGAGGAGCATGATTTATTACTACTGCGTGCAGTAATAAAGCATGGATATGGAAGATGGCAAGCTATCGTTGATGACAAAGACTTGAAAGTTCAAGAAGTGATTTGTCAAGAGCAGAATCTCCCCTTCATAAATTTTCCTGTCCCAGGAGGTTCTCAAGCACCAGATGGGACCCATACAGCTAATTCTGAAGCACCTGGAAACCAGACAAAAGGAACAGGCAGTGGGACTGATTTAGCCCCTGATGTTACACAGGGAGGAACTGATGCTTCAAACAGAGCACAGCTGTATCAAGATTCTTCTGTCTTATATCATTTTAGAGAAATGCAGAGAAGACAGGTTGAATTTATTAAGAAAAGGGTGCTTCTATTGGAAAAAGCTCTCAACACCGAGTACCAGAAAGAATACTTCGGTGACATAAAATCAAATGAGATTGCAAGTGAAGATCCTGAAAATGAAGCCAAGGTTATAGACATATCTAGTCCAAGCAATGTAGAGGTTGATGCTCAAATCATGGACCAGTTGCCTCGTATAGAAGTAATTGCTTCAGAAGAAATTTCAGCGACTGCTTGTGATGATAAACCAGAACGTGCAGAAATGGCTCGGCTTTATAACGAGATGTGCAAGGTACTTGCAGAAAATGTCCATGAGTCAGTTCAGTCATACTTAGCTAACCAACCAGCAAGTTTACAGTTGAGAAAGAAACTTCTTCCTCTCGAAGCAATTTGTGAAGACATAAACAGAATACTCTCACCCCAACTGCAGAATCCTGCCACTTCAGAACAGACTCTGCTAGTGCTGAGCAGGATACCGAAATGA 4071 40.24 MSSLVERLRVRSDRRPIYNLDESDDDADLVHGKSGMSQEKFEKIVRSDAKDDSCQACGESGNLLSCETCTYAYHPKCLLPPLKAPLPSNWRCPQCVSPLNDIDKILDCEMRPTVAGDSDASKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFIKAFKTHPRLKTKVNNFNRQMASNNNSEEDFVAVRPEWTTVDRIIACRGNDDEREYLVKWKELSYDECYWEFESDISAFQPEIERFNKIQSRSRKLSSSKQKVTIRDISDSKRKQREFQQFEHSPEFLSGGSLHPYQLEGLNFLRFSWGKQTHVILADEMGLGKTIQSIAFLASLFEENVSPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSSHARSVIRDYEFYFPKSHKKIKKKKSGQIVTESKQDRIKFDVLLTSYEMINLDSASLKPIKWECMIVDEGHRLKNKDSKLFLSLKQYLSKHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDATEAYKLLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCTYKKWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDDAAIDRLLDREQVGDEEATLDDDEDDGFLKAFKVANFEYIDEVEAVVEEEVQKAPVENKAAVNNSERTSYWEELLRDRYEVHKIEEFNALGKGKRSRKQMVSVEEDDLAGLEDISSEGEDDNYEADLTDGETTSAGVPSGRKPYRKKARVDNMEPLPLMEGEGRSFRVLGFNQNQRAAFVQVLMRFGVGEFDWAEFTPRLKQKTFEEIKDYGTLFLAHISEDITDSPTFSDGVPKEGLRIPDVLVRIAVLLLVRDKVKLALEKPGAPLFEDDIVSRFPGLKGGRHWKEEHDLLLLRAVIKHGYGRWQAIVDDKDLKVQEVICQEQNLPFINFPVPGGSQAPDGTHTANSEAPGNQTKGTGSGTDLAPDVTQGGTDASNRAQLYQDSSVLYHFREMQRRQVEFIKKRVLLLEKALNTEYQKEYFGDIKSNEIASEDPENEAKVIDISSPSNVEVDAQIMDQLPRIEVIASEEISATACDDKPERAEMARLYNEMCKVLAENVHESVQSYLANQPASLQLRKKLLPLEAICEDINRILSPQLQNPATSEQTLLVLSRIPK* 1357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5518758 5591661 + Vvi4g521 Vvi4g521 785300

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g521 1356 SUPERFAMILY Chromo domain-like 181 245 IPR016197 -
Vvi4g521 1356 Pfam CHD subfamily II, SANT-like domain 937 1069 IPR009462 GO:0003677|GO:0006338
Vvi4g521 1356 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Vvi4g521 1356 Gene3D - 278 528 IPR038718 -
Vvi4g521 1356 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 276 519 IPR027417 -
Vvi4g521 1356 MobiDBLite consensus disorder prediction 904 925 - -
Vvi4g521 1356 Gene3D - 529 753 IPR027417 -
Vvi4g521 1356 MobiDBLite consensus disorder prediction 1130 1176 - -
Vvi4g521 1356 Pfam SNF2-related domain 307 586 IPR000330 GO:0005524|GO:0140658
Vvi4g521 1356 Gene3D - 1040 1219 - -
Vvi4g521 1356 CDD SF2_C_SNF 607 733 - -
Vvi4g521 1356 SMART helicmild6 638 722 IPR001650 -
Vvi4g521 1356 SMART DUF1087_2 843 908 IPR009463 -
Vvi4g521 1356 Pfam Chromo (CHRromatin Organisation MOdifier) domain 102 155 IPR023780 -
Vvi4g521 1356 Pfam Chromo (CHRromatin Organisation MOdifier) domain 193 241 IPR023780 -
Vvi4g521 1356 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Vvi4g521 1356 Pfam PHD-finger 54 96 IPR019787 -
Vvi4g521 1356 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 612 773 IPR001650 -
Vvi4g521 1356 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 521 777 IPR027417 -
Vvi4g521 1356 SMART ultradead3 282 495 IPR014001 -
Vvi4g521 1356 SMART DUF1086_2 913 1072 IPR009462 GO:0003677|GO:0006338
Vvi4g521 1356 MobiDBLite consensus disorder prediction 904 944 - -
Vvi4g521 1356 Pfam CHD subfamily II, DUF1087 845 905 IPR009463 -
Vvi4g521 1356 CDD CD1_tandem 98 170 - -
Vvi4g521 1356 SMART chromo_7 99 162 IPR000953 -
Vvi4g521 1356 SMART chromo_7 190 244 IPR000953 -
Vvi4g521 1356 Pfam Helicase conserved C-terminal domain 609 722 IPR001650 -
Vvi4g521 1356 MobiDBLite consensus disorder prediction 1139 1176 - -
Vvi4g521 1356 CDD CD2_tandem 190 241 - -
Vvi4g521 1356 ProSiteProfiles Chromo and chromo shadow domain profile. 100 182 IPR000953 -
Vvi4g521 1356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 97 IPR013083 -
Vvi4g521 1356 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 5 1058 - -
Vvi4g521 1356 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 5 1058 - -
Vvi4g521 1356 Gene3D - 98 196 - -
Vvi4g521 1356 ProSiteProfiles Rubredoxin-like domain profile. 61 105 IPR024934 GO:0005506
Vvi4g521 1356 SUPERFAMILY Chromo domain-like 66 176 IPR016197 -
Vvi4g521 1356 ProSiteProfiles Chromo and chromo shadow domain profile. 192 241 IPR000953 -
Vvi4g521 1356 Gene3D - 197 241 - -
Vvi4g521 1356 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 484 IPR014001 -
Vvi4g521 1356 SMART PHD_3 53 96 IPR001965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g521 K11643 CHD4, MI2B; chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-] - vvi:100261114 2638.22
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g521 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi09g02986 . . . . . . . . . . . . . . . . Cme07g00110
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009048 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14759 PF00176 SNF2_N 1.40E-65 CL0023 Vvi TR