Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g523 ATGACAGTTGAACCGAGGGTTGAAGACCCAAATGATCAATTTCCGATTGGTATGCGGGTTCTCGCCGTTGATGATGACCCTACCTGTCTTAGGCTCTTGGACACTCTGCTTCGTCGATGCCAGTACCATGTTACGACAACTAGTCAGGCAATCACAGCATTGAAGATGCTGAGAGAAAACAAAAACCAGTTTGATTTGGTTATCAGTGATGTGCATATGCCTGATATGGACGGTTTCAAGCTGCTTGAGCTTGTGGGGCTTGAGATGGACCTACCTGTAATAATGCTATCGGCAAATGATGACCCGAAGCTTGTGATGAAGGGAATTACCCATGGGGCTTGTGATTATTTGCTGAAACCTGTTCGAATTGAGCAGCTAAAGAACATATGGCAACATGTAATCAGGAGAAGGAGGTTTGATCCTAGGGACCAGAATAATTCTGACAGTCGAGACAAGCGTCAAGGACCTGGTGAAGGAGGACAAGGGTCCAGTGAACCAGGGAATCCTGATCATGGGAAGCTTAATAAAAAGCGGAAGGACCAGAATGAAGATGACGATGAGGAAAATGATGAGAATGGACATGATAATGAGGACCCATCAAGTCAGAAGAAGCCTCGTGTTGTTTGGTCTGTAGAGCTGCATCGCAAATTTGTTGCAGCTGTTAATCAGTTGGGCATTGACAGGGCTGTACCTAAAAAGATATTAGATTTGATGAATGTTGAGAAGCTTACAAGAGAAAATGTAGCAAGCCATCTCCAGAAATATAGGCTTTACCTAAAAAGGATCAGCTGTGTGGCAAATCAGCAAGCTAATATGGTTGCAGCCTTGGGCAGTACAGATTCTACCTATTTGCATTCACTTAATGGCCTTGGAAATTTCTACAATTTGTCTGGATCTGGGCAGTTGCCAAACTCTACTTTCAGATCCTTCCCACCTAGTGGAATGCTCGGTAGATTGAACACTCCTTCTGGTATGGGTATGCATTGCCTTTCTTCTTCAGAGATGGTTCAACTGGGACATTTGCAAAACTCAAGCAATCCTATTAACAAACTTGAGCAATTGCAACATAATAAAGGCATCATCCGTGTTGGAGAGCTCTCTACTACTATTGGGGATTCAACTGTTTTCCCTGCTTCAAGTGGCTTCCCAGATACAAAAATGACTTCCAGTAGGTCATCCAGCTCTCTTCTTGTTGCTGCAAACAGTCCCTTAATGTTACAAGGACACTCCCAAGAGAACCAAAGAAGAGGAGGGTTGAGAAATCAAAATTCTGCTACATTGTTAAACGCAGAGCTTCCTTCTTCATTTCCAGATCATGGTAGATGTAATGACAACTGGTCAACTGCTGTTCAGCCATCTGCGATCCAATCAAGTTCTTTTCCATTAAGTGACTGCTTTAAACAGGCTACTTTGCATCCTAGTAACTTGAGAGACAATATCTCTTCAGTGACCCTGCAAAGTGGGACTAATCTACGTGATGTTTCTTGTGTCACTTCAATGCCTCCTCCACTGCCAGATTCAAGAACAGATTTAGAATGTCAAGCAATGACAATCAGTAGTAATTCTGTAAAAATTATGAATTATTCCCCAAAAGTGTGGGATGACCATAAACACAAGCTCTCTCACCATTCAAGTCTCGGATGCAGCTCAGCAAACTCTTTGATCCCTGCTCCTGGAGTAATGGGTACATTTGACCAGGGTTTGGACCTGAAAAACACAATATCTGACAGAAATATGGATTTCAATTTGATGGGGGAGTCGAATTTTGTCAATCCCTTGCCCATGCAGCAGAATGCAGTTGAGGAATCAGCTTCAGATACAGCATTGCAGTTGAAGCAAGGTTGCACCTTGGGGCAAAGAAAACCACAAAGCAGCTATGCTTCTAATAATGTTGGTTCCTTGGAAGATCTAGTGAGTGCAATGATGAAACAGGAACAGGACAAGACGACATTGATGGAAGGAGACTTAGGATATGATGCTTATTCCCTTGGGACGTGTCTATGA 2004 43.06 MTVEPRVEDPNDQFPIGMRVLAVDDDPTCLRLLDTLLRRCQYHVTTTSQAITALKMLRENKNQFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANDDPKLVMKGITHGACDYLLKPVRIEQLKNIWQHVIRRRRFDPRDQNNSDSRDKRQGPGEGGQGSSEPGNPDHGKLNKKRKDQNEDDDEENDENGHDNEDPSSQKKPRVVWSVELHRKFVAAVNQLGIDRAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGSTDSTYLHSLNGLGNFYNLSGSGQLPNSTFRSFPPSGMLGRLNTPSGMGMHCLSSSEMVQLGHLQNSSNPINKLEQLQHNKGIIRVGELSTTIGDSTVFPASSGFPDTKMTSSRSSSSLLVAANSPLMLQGHSQENQRRGGLRNQNSATLLNAELPSSFPDHGRCNDNWSTAVQPSAIQSSSFPLSDCFKQATLHPSNLRDNISSVTLQSGTNLRDVSCVTSMPPPLPDSRTDLECQAMTISSNSVKIMNYSPKVWDDHKHKLSHHSSLGCSSANSLIPAPGVMGTFDQGLDLKNTISDRNMDFNLMGESNFVNPLPMQQNAVEESASDTALQLKQGCTLGQRKPQSSYASNNVGSLEDLVSAMMKQEQDKTTLMEGDLGYDAYSLGTCL* 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5599591 5606765 - Vvi4g523 Vvi4g523 785302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g523 667 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Vvi4g523 667 PIRSF RR_ARR_type-B 1 666 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vvi4g523 667 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 260 IPR017930 -
Vvi4g523 667 CDD REC_typeB_ARR-like 20 134 - -
Vvi4g523 667 Gene3D - 18 182 - -
Vvi4g523 667 SUPERFAMILY CheY-like 17 142 IPR011006 -
Vvi4g523 667 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 642 IPR045279 GO:0009736
Vvi4g523 667 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677
Vvi4g523 667 MobiDBLite consensus disorder prediction 140 206 - -
Vvi4g523 667 Gene3D - 200 263 - -
Vvi4g523 667 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
Vvi4g523 667 SUPERFAMILY Homeodomain-like 202 261 IPR009057 -
Vvi4g523 667 MobiDBLite consensus disorder prediction 140 155 - -
Vvi4g523 667 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Vvi4g523 667 SMART REC_2 18 130 IPR001789 GO:0000160
Vvi4g523 667 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 1 642 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g523 Vvi11g640 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14760 PF00072 Response_reg 1.20E-23 CL0304 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g523 - K14491 vvi:100250889 1249.19