Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g528 ATGTCTGACCACCATTCCTCTCCGTTCCCTTCATGCTTCAGGCCACCATCCGCCCCTGCAGCAGCCGCCGCCGCCGCCGTTGACCACCTCCGGCCGCCGGAGGCGCCTGCCGGTTCCGGGAACCCCAATCTCGCCACCTGCGTCTACCACACGGATCTTGGCATCTTCACTCTCACCTGGTCCCGCAACTTCTTCGGCCGATCCCTCCACCTCCAGCTCCACCCCTCCGCCGCCGCTAACCTCTCTCCTCTTTCTCTTTCCAACCCTCTTTCGCTCTCTACCCCAGCTTTTCACCTCCATATCAAGCCCTTTGTCTTCTGGAAGAAGTATGGGTCCAAGAAGCTCCACATGATCCTTCTGGTGGGGGACTCTGAGAAAGAAGCTTACAACAAAACCAGAGCTAAAAAGGCTGAGAGAACGCAAGTTTTGGTTTTGAGAAGAGAGCATGTGTTTGGAAACAAGGTTTACACAACAAGAGCGAGCTTCGGAGGGAAAACCAGGGAGATTAGCATAGATTGCAGCGTGGGAGACGACCCGAGACTCTCCTTCAGCGTTGATCGGAAAAGGGTCTTGCAGATAAAGCGGCTCAAGTGGAAATTCAGAGGAAACGAGAAGATTGAAGTTGATGGGATCCCAATACAGGTGTCGTGGGACGTGTACAACTGGTTGTTCGACGATGTAATGGAGAGCCATGCAGTGTTCATGTTCAAGTTCGAGAGAGTAGGGTTTGAGGAAGAAGACGAAGAGTTGCAGCAGCAGCAGCAGCATTTGAATGAGAAGAACGGGATGGCGCTAAAAAAGAAATACATAGATTCAAAGATAGATAGATCAATCACTCTGACAAATTTTCAGCTTGTCTGCCACCAAAAAAGGTAA 876 51.48 MSDHHSSPFPSCFRPPSAPAAAAAAAVDHLRPPEAPAGSGNPNLATCVYHTDLGIFTLTWSRNFFGRSLHLQLHPSAAANLSPLSLSNPLSLSTPAFHLHIKPFVFWKKYGSKKLHMILLVGDSEKEAYNKTRAKKAERTQVLVLRREHVFGNKVYTTRASFGGKTREISIDCSVGDDPRLSFSVDRKRVLQIKRLKWKFRGNEKIEVDGIPIQVSWDVYNWLFDDVMESHAVFMFKFERVGFEEEDEELQQQQQHLNEKNGMALKKKYIDSKIDRSITLTNFQLVCHQKR* 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5662464 5663800 - Vvi4g528 Vvi4g528 785307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g528 291 Coils Coil 240 260 - -
Vvi4g528 291 Pfam Plant protein of unknown function (DUF868) 42 116 IPR008586 -
Vvi4g528 291 Pfam Plant protein of unknown function (DUF868) 117 255 IPR008586 -
Vvi4g528 291 PANTHER EXPRESSED PROTEIN 6 116 IPR008586 -
Vvi4g528 291 PANTHER EXPRESSED PROTEIN 116 256 IPR008586 -
Vvi4g528 291 PANTHER OS08G0422401 PROTEIN 116 256 - -
Vvi4g528 291 PANTHER OS08G0422401 PROTEIN 6 116 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g528 - - - vvi:100262872 434.876
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g528 . . Bda01g00758 . . . . . . . Cma01g01478 . . . Sed11g1153 . . Bhi04g00038 Tan02g2753 Cmetu03g1994 . Hepe10g0225 . Lcy13g1818 . . . . . . . Cone10ag0690 . . . . . . Cme03g01587 . Blo18g00014 Bda01g01007 . . . . . Sed05g1726 Cmo01g01534 . . . . . . . Bhi09g02976 Tan01g3589 Cmetu07g2171 . Hepe01g1983 Mch11g0519 . . . . . . . . . . . Cme07g00104
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002448 3 2 1 2 1 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 1 60