Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g531 ATGGCCAGACCTCAGCAGCGATATCGAGGCGTCCGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCTGAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCGGGCCTATGACGAGGCGGCGAGGCTCATGTGTGGTCCGAGGGCGAGAACCAACTTCCCTTACAATCCCAACGCCTCCCAGTCGTCGTCTTCCAAGCTTCTTTCAGCTACTTTAACTGCCAAGCTGCATAGGTGTTACATGGCCTCACTTCAGTTAACCAAACAATCCCTGCATGAGCCTCAAAAGCCACCGACTTCCCATGTCGCCACAACCACCAGCATTGCGGGGAAACCTCTTGAAGATGATCACATACAGCAAATGATTGAGGAGTTGCTTGACTATGGTTCCATCGAGCTCTGCTCAGGCTCCATAATGTAG 450 53.33 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNASQSSSSKLLSATLTAKLHRCYMASLQLTKQSLHEPQKPPTSHVATTTSIAGKPLEDDHIQQMIEELLDYGSIELCSGSIM* 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5696450 5697730 - Vvi4g531 Vvi4g531 785310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g531 149 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Vvi4g531 149 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Vvi4g531 149 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Vvi4g531 149 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Vvi4g531 149 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Vvi4g531 149 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Vvi4g531 149 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Vvi4g531 149 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 121 146 - -
Vvi4g531 149 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 118 - -
Vvi4g531 149 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Vvi4g531 149 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 1 118 - -
Vvi4g531 149 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 121 146 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14762 PF00847 AP2 5.00E-12 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g531 - - vvi:100252609 265.388