Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g533 ATGGTCAACATACTACCTTCACTAATCAGTTCTACCTTGACTTTAAAGTACATGAAATTTAAATTATTTTTTAAAAATTCATATTTTAATGAACTTTTTTTTATATGGTTTCTCTCATTTCTAGGGTTTTCACCAACTTCGCTTTCTTCTCCGGACCTAGCTGCCGATCTCTCGACCGCCAAAATGCCGTCACACAAGACCTTCATCATCAAGAAGAAACTGGCGAAGAAGATGAGGCAGAATCGTCCCATCCCTCACTGGATCCGTATGAGGACCGACAACACCATCAGGTACAACGCAAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTAA 339 42.18 MVNILPSLISSTLTLKYMKFKLFFKNSYFNELFFIWFLSFLGFSPTSLSSPDLAADLSTAKMPSHKTFIIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF* 113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5719504 5720985 - Vvi4g533 Vvi4g533 785312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g533 112 Hamap 50S ribosomal protein L39e [rpl39e]. 62 112 IPR000077 GO:0003735|GO:0005840|GO:0006412
Vvi4g533 112 PANTHER 60S RIBOSOMAL PROTEIN L39-2 37 112 - -
Vvi4g533 112 ProSitePatterns Ribosomal protein L39e signature. 91 107 IPR020083 GO:0003735|GO:0005840|GO:0006412
Vvi4g533 112 SUPERFAMILY Ribosomal protein L39e 64 111 IPR023626 -
Vvi4g533 112 PANTHER RIBOSOMAL PROTEIN L39E 37 112 - -
Vvi4g533 112 Pfam Ribosomal L39 protein 70 110 IPR000077 GO:0003735|GO:0005840|GO:0006412
Vvi4g533 112 Gene3D Ribosomal protein L39e 62 112 IPR023626 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g533 K02924 RP-L39e, RPL39; large subunit ribosomal protein L39e - pop:18100582 100.523
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g533 Vvi11g619 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g533 . . . . . . . . . . . . . . Sed05g1725 . . Bhi04g00035 Tan02g2750 Cmetu01g0581 . Hepe10g0228 . Lcy13g1815 . . . . . . . . . . . . . . . Blo17g00008 . . . . . . Bma02g00013 . . . . . . . . . Bhi09g02973 . . . . Mch11g0521 . . . . . . . . . . . Cme07g00102
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002071 1 4 2 3 2 0 5 1 0 0 2 0 3 3 2 3 0 3 3 0 2 1 1 1 1 2 4 3 2 3 57