Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g535 ATGAAGTTTTTTCTTCTGATTCTGCCTCTTCTTCAGTCCATTTGGAGTTTTCACTTCTCTATTGTTGAGGCCATCTCAGACCCTCCTCTTTCCTCTATATCTGCTCCTCTTTCTTCACCACCAATTGGGGCCACTTCACCAATCTCTTCATCAATGGCTGCCTTCTCTCCAGCTATTCAAGAGGGAAGTGAAGAAAATCAGAAGGATTCTCACAAGAAAACGTTTATAGCACTCACTGTTGCTTCTGCTGCACTGGGTGTAACCATATTGATTCTGTTGTCTCTGTGGATTCATAAGAAGTGCTCCCAAAAATCCCACAAGAGCAATGCTCAGAGCTCAGATGCAGAGAAAGCCCTCACTTTAGGTCCATTGTTGGCTAAATTCAACACCATGAAAGTGATTGGGAGAAAGGGTTCTGTCTCTTGTATTGATTATAAGGTACTAGAAACTGCAACAAACAATTTTCAGGAAAGTAATATCCTGGGTGAGGGCGGGTTTGGTTGCGTCTACAAGGCGCGGTTGGATGATAACTCCCATGTGGCTGTGAAGAAGATAGATGGTAGAGGCCAGGATGCTGAGAGAGAATTTGAGAATGAGGTGGATTTGTTGACTAAAATTCAGCACCCAAATATAATTTCTCTCCTGGGTTACAGCAGTCATGAGGAGTCAAAGTTTCTTGTCTATGAGCTGATGCAGAATGGATCTCTGGAAACTGAATTGCACGGACCTTCTCATGGATCATCTCTAACTTGGCATATTCGAATGAAAATCGCTCTGGATGCAGCAAGAGGATTAGAGTATCTACATGAGCACTGCAACCCACCAGTCATCCATAGAGATCTTAAATCATCTAATATTCTTCTGGATTCAAACTTCAATGCCAAGCTTTCGGATTTTGGTCTAGCTGTAATTGATGGGCCTCAAAACAAGAACAACTTGAAGCTTTCAGGCACCCTGGGTTATCTAGCTCCTGAGTATCTTTTAGATGGTAAACTGACTGATAAGAGTGATGTGTATGCATTTGGAGTGGTGCTTCTAGAGCTACTACTGGGAAGAAAGCCTGTGGAAAAACTGGCACCAGCTCAATGCCAGTCCATTGTCACATGGGCCATGCCACAGCTGACTGACAGATCAAAGCTCCCAGGCATCGTTGACCCTGTGGTCAGAGACACGATGGATCTAAAGCATTTATACCAAGTTGCTGCTGTAGCTGTGCTATGTGTGCAACCAGAACCAAGTTACCGGCCATTGATAACAGATGTTCTGCACTCCCTCATCCCACTCGTTCCAGTTGAGTTGGGAGGGATGCTAAAAGTTACCCAGCAAGCGCCGCCTATCAACACCACTGCACCTTCTGCTGGAGGTTGA 1368 44.66 MKFFLLILPLLQSIWSFHFSIVEAISDPPLSSISAPLSSPPIGATSPISSSMAAFSPAIQEGSEENQKDSHKKTFIALTVASAALGVTILILLSLWIHKKCSQKSHKSNAQSSDAEKALTLGPLLAKFNTMKVIGRKGSVSCIDYKVLETATNNFQESNILGEGGFGCVYKARLDDNSHVAVKKIDGRGQDAEREFENEVDLLTKIQHPNIISLLGYSSHEESKFLVYELMQNGSLETELHGPSHGSSLTWHIRMKIALDAARGLEYLHEHCNPPVIHRDLKSSNILLDSNFNAKLSDFGLAVIDGPQNKNNLKLSGTLGYLAPEYLLDGKLTDKSDVYAFGVVLLELLLGRKPVEKLAPAQCQSIVTWAMPQLTDRSKLPGIVDPVVRDTMDLKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLIPLVPVELGGMLKVTQQAPPINTTAPSAGG* 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5740293 5744083 - Vvi4g535 Vvi4g535 785314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g535 455 ProSitePatterns Protein kinases ATP-binding region signature. 161 184 IPR017441 GO:0005524
Vvi4g535 455 Gene3D Transferase(Phosphotransferase) domain 1 231 430 - -
Vvi4g535 455 SMART serkin_6 155 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g535 455 ProSiteProfiles Protein kinase domain profile. 155 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g535 455 SUPERFAMILY Protein kinase-like (PK-like) 136 425 IPR011009 -
Vvi4g535 455 Gene3D Phosphorylase Kinase; domain 1 120 230 - -
Vvi4g535 455 PANTHER BNAC02G46490D PROTEIN 4 446 - -
Vvi4g535 455 PANTHER OS01G0750732 PROTEIN 4 446 - -
Vvi4g535 455 Pfam Protein kinase domain 155 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g535 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672|GO:0006468
Vvi4g535 455 CDD STKc_IRAK 161 428 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76628 PF00069 Pkinase 1.80E-48 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g535 - - vvi:100264651 881.322