Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g537 ATGTCGTCTGTAAAGATACTAGAAGAATCTTCATCTGCGAATCCTCTTGTGCTTCGACTTCAACAAATTCTAACCTCATGTTCCAGATCAATCGAAACTGGAGATCTCCATAAATCTGGAAGCTCAGTGTCGGAGCTCGTGAACTACCTTGATTCGATTTCCGATGCTGCTTTATCTGATACGAGCAATGAAGAATCGAGAAACAATGCGCTCGAAGTTCTCTCGGAGATTCACCTGTATATATGCCAGCCCTTGTTGGACCAGGCGGTTGTGGATGCTCTTTCTTTTGAGTTGCCTAAGGCGGTTGCTAAGTTTGCATGCGTCTCTGGCAAATGTCTGGAGATTGTTGAGAGTATTGTCAATCAGTTTGTAGCGACTTGTAGCCCTCGGGATTTGATTCCGATTTTCTGCGAGGCATTAGATGTTCCAAGTGGGATGTCCAAGGCTCCTAATTATTATGCTCCTTTTCTAAGTGGGCTATCAAAAGTATTTCTTTCCATTCCAAGACGTCATTTTGAGCAAGTAAAAGAAGCAGTCCCTGTTATCCTTAGTGTTTTGAAGGCCATGACTTCAGAGTTAGATGATGAAGACACAAATTCTGAGGATTTGTTTGCCAGAGCCATCAGCATTGCCAATTCTATACAAACAGTTTGTGGAAAGTTGGCGGGCAGGCTAAATGAAAAACTCCGTGCTCTACTTGGCTTGTTTGTCTTGCAAATCATGTCTCTTCTCTGTATGAGGGAGAAAGTTTCAAGCTGTCTTACCTTGGTGTTACAACTATCCCACTTCCTTCCATATTGTGGCTTATCCTATCTTGGTTTACTTACTGGATGTGATGTTGACACAATTATTGATATTGTTCTTAAAGAGGATGGAGATGATTATATAAGTTGTTTTCCCTATGTCAAGCATGGAGCATCTCTTGCAGTGATTTGTGGCCATATGTCAAACATGGTCGCTCAATCAGCTGAGGAGGATTTGACTGTCCTTAAGGATGCTCTTCAAAGTAACCAGACTAAAAGATGGCAGGCAGTGGGCATGTTAAAGCACATATTTTCCTCTGCCAATCTGCCATGGGAGTTAAAGAAACATACCATCAACTTCTTGCTTTGGATTATGGATGGGAATCTATCTGAAAAATGTAATGATGAAGTTTCAGACTGCTCATCTTATGTGCCTGGTCTTTTTGCTTCTTTGCAGGCTATTGAGATGGTCATTATGTACACATCAGATTCAGTGCTAAGGAGGAATGCTTTTAATTCTTTCAAAAAGGTACTTGCCGATATTCCAACCTCTCCACGGTTTGACATTTTAAAAGCGTTGATTGCAAATAGCAATTCTTCTTCCATGACTGCAATTCTTGTAGATTGTGTTAGAGAGGAAATGCGTATGGAAAATTGCCAAAGAATTTCTGTAGGACATGATGAATTCTTGCAAGCTGAAAAATCCTGCCAAAGTTCATTGTTTTGGAGTGCAGATGTTCTCGAATTGGTGGAATTGATTTTGAGACCTCCTAAGGGAGGACCCCCAGCCCTTCCTGAGGATAGCGATGCGGTTCTATCTGCTCTTAACCTTTACAGATTTGTATTGATAACAGAGTCAACAGGGAAAACCAATTGCACAGGGGTGTTATCCAAGAACAATTTACACAAGGCATACAACGAATGGCTTCTACCTCTTCGAACTTTGGTAACAGGCATTGAGGCTGAAAACAAGAATGATTATGACCAACTTGTGGTTGACATGGTATGTGCCCTCAATCCTGTTGAATTAGTCTTGTATCGTTGTATTGAGCTTGTCGAAGAAAAATTGAAACAATAG 1821 41.08 MSSVKILEESSSANPLVLRLQQILTSCSRSIETGDLHKSGSSVSELVNYLDSISDAALSDTSNEESRNNALEVLSEIHLYICQPLLDQAVVDALSFELPKAVAKFACVSGKCLEIVESIVNQFVATCSPRDLIPIFCEALDVPSGMSKAPNYYAPFLSGLSKVFLSIPRRHFEQVKEAVPVILSVLKAMTSELDDEDTNSEDLFARAISIANSIQTVCGKLAGRLNEKLRALLGLFVLQIMSLLCMREKVSSCLTLVLQLSHFLPYCGLSYLGLLTGCDVDTIIDIVLKEDGDDYISCFPYVKHGASLAVICGHMSNMVAQSAEEDLTVLKDALQSNQTKRWQAVGMLKHIFSSANLPWELKKHTINFLLWIMDGNLSEKCNDEVSDCSSYVPGLFASLQAIEMVIMYTSDSVLRRNAFNSFKKVLADIPTSPRFDILKALIANSNSSSMTAILVDCVREEMRMENCQRISVGHDEFLQAEKSCQSSLFWSADVLELVELILRPPKGGPPALPEDSDAVLSALNLYRFVLITESTGKTNCTGVLSKNNLHKAYNEWLLPLRTLVTGIEAENKNDYDQLVVDMVCALNPVELVLYRCIELVEEKLKQ* 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5783787 5809616 - Vvi4g537 Vvi4g537 785316

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g537 606 PANTHER GLOMULIN 12 606 IPR019516 -
Vvi4g537 606 Pfam Uncharacterised protein family, YAP/Alf4/glomulin 58 209 IPR013877 -
Vvi4g537 606 Pfam Uncharacterised protein family, YAP/Alf4/glomulin 366 574 IPR013877 -
Vvi4g537 606 Coils Coil 320 340 - -
Vvi4g537 606 SUPERFAMILY ARM repeat 41 439 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g537 K23345 GLMN; glomulin - vvi:100264691 1184.47
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g537 . . . . . . Bma04g00082 . . . Cma01g01482 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe04g00070 . . Sed13g1993 Cmo01g01538 . . . . . . . Bhi09g02969 Tan01g3596 Cmetu07g1020 . Hepe01g1987 Mch11g0524 . . . . . . . . . . . Cme07g00097
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006494 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 6 3 1 38