Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g538 ATGGAGCCGGATGTCAGCATCGAGACCAGCTCCATGATCCGCGTGGCTGTCATCCCCGTTGGGCCCGTTCCTCCTAACCACCTTCGGGACTACTCCGCCATGCTCCTCCGTCACTGCACCATTTCACTCTCCACCATCAGTTCCTTCTACACAGAGCACCAGAAGAGCCCCTTCTCCAATCAGCCTTGGGACTCCGGCAGCCTTCGCTTCAAGTTCATGCTTGGCGGCTCACCGTCCAGTCCCTGGGAGGATTTCCAGTCCAATCGCAAAATTCTCGCTGTCATCGGCCTCTGTCACTGCCCCTCCTCTCCCGATCTTGACGCCGTTGTTGATCAGTTCGCCGCCGCCTGTAAGGGTTACCCCTCCGCGCTGGTCCAGCGCTGCTTCGGGTTTTGCCCCGGTGACTCTCAGCTAGAGGATGGCAGTAAGAGAGAGGGTAATTTAATACTGTTTCCTCCTTCTGATCGGCAAACTCAGGAGTTCCACATGAACACAATGGTTCAAGATATCGCTGCTTCATTGTTGATGGAATTTGAAAAATGGGTTCTTCAGGCAGAGTCTGCTGGAACGATTCTGAAGACACCTTTAGATTCTCAAGCCAGTCTCAGCTCAGAGGAGGTAATCAAGGCTAAAAAACGAAGGCTTGGCCGTGCACAGAAGACTATAGGTGACTATTGTTTATTGGCTGGATCACCTGTTGATGCCAATGCCCATTATTCTACTGCATTAGAGCTTGCTCGGTTGACAGGGGATTATTTCTGGTATGCTGGAGCCCTGGAGGGTAGTGTTTGTGCTCTACTGATAGACCGAATGGGCCAAAAGGATCCAATTTTGGAGGGGGAGGTCAAATATCGGTACAATGATGTTATCTCGTATTATAGAAAGTCTTTTATACAAGACAATGCTCAGAGAGTTTCACCCTTGAGCTTTGAACTTGAGGCTACTTTGAAATTGGCAAGGTTTCTTTGCAGACGTGAGTTGGCTAAGGAGGTAGTAGAATTGTTGACAGCTGCTGCTGATGGTGCAAAATCTTTGATTGATGCCAGCGATCGGCTCATATTATATGTTGAAATAGCCCGTTTATTTGGTACCCTTGGCTATCACCGGAAAGCTGCCTTTTTCTCAAGGCAGGTAGCTCAGTTGTATTTACAACAGGAAAATGGATTGGCTGCTATCAGTGCCATGCAAGTCTTGGCAATGACCACAAAAGCTTATCGTGTTCAAAGTAGAGCATCTGATTCAAAACATTCTCTTCCCTCTGAAATTGGACCAAGTTATGCTGATGGTGGGAAAATGCATCACCACTCAGTAGTCTCATTATTTGAGTCTCAATGGAGCACCCTGCAGATGGTCGTTCTAAGAGAGATACTAATGTCTTCTGTGCGTGCTGGAGATCCTCTTGCTGCATGGAGTGCAGCAGCTCGCCTACTTAGATGTTATTACCCTCTAATTACACCTGCTGGTCAAAATGGCCTTGCTACTGCACTTAAAAATTCATCAGAGAGGCTGCCTTCAGGAACCCGGTGTGCTGATCCTGCCTTACCTTTTATAAGGCTGCATTCTTTTCCTCTCCAGCCCTCACAAATGGACATTGTAAAACGCAATCCAGCAAGAGAAGATTGGTGGGCTGGATCTGCTCCTTCCGGGCCTTTTATTTATACACCATTCAGCAAAGGAGAGCCAAATGATACCAGTAAGCAGGAGCTGATTTGGATTGTTGGAGAACCAGTCCAGGTGCTGGTTGAGTTGGCAAATCCTTGTGGATTTGACTTGATGGTTGAGAGTATATATCTCTCAGTGCATTCAGGAAATTTTGATGCTTTTCCCATTAGGGTTAATCTCCCACCTAATTCATCAAAAGTGATCACCTTATCAGGCATTCCAACTTCTGTGGGACACGTGACAATTCCTGGGTGCACTGTTCATTGTTTTGGTGTCATTACTGAACACCTTTTCAAGGATGTTGACAATCTGCTTCATGGAGCTGCACAAGGACTTGTGCTTTCTGATCCTTTCCGTTGCTGTGGGTCAGCAAAGTTAAGAAATGTATCTGTTCCACAGATTTCTGTAGTGCCCCCATTGCCATTGCTTGTGTCACGCATTGTAGGTGGTGTTGGTGCTGTTATTTTATATGAAGGTGAAATTCGTGATGTATGGATAAGTCTAGCTAATGCAGGTACAGTTCCAGTTGAGCAGGCACACATTTCATTGTCTGGAAAAAACCAAGATGCCGTTATTTCAGTTGCATATGAAACCTTAAAGTCTGTCCTTCCTTTAAAGCCTGGTGCAGAAGTGACATTGCCAGTAACCTTAAAAGCCTGGCAACTTGGCCTGGTGGACCCTGATAATGCTGCTGGCAAGAGTGCCTCCGGAAGCACTGGGAGGCAATCCAAGGATGGAATCAGCCCCATACTGTTGATCCATTATACAGGGCCACTGACAAATCCTGGAGAACCGCCAGAAAATGGCTCTTCTGTGCCCCCAGGCAGACGTCTGGTTGTTCCCTTGCACATCTGTGTTTTGCAGGGCTTGTCTCTTGTGAAGGCTCGTTTGCTTTCGATGGAAATTCCTGCACATATTGGTGAAAACCTTCCTAAACCAGCCGAATTAAATGCTTCTATTAAGAACTTGATTTCTAGAATAAAGCTGAGGTGGCAATCTGGGCGGAACAGCTCAGGAGAATTAAATATTAAAGATGCGATACAGGCAGCCCTTCAGACATCTGTTATGGACATACTGCTCCCAGATCCATTAACGTTTGGCTTCAAGCTTTCTAAAAATGTTCCTTCCACATCTAAAGGGTCTGTACTGGCACATGACATGACCCCTATGGAAGTTCTGGTTCGCAATAACACCATGGAAATGATCAAGATGCGTTTTAGTATTAGATGCAGAGACGTAGCCGGAGCAAATTGTGTTGAGGGTGACAAGGCAACTGTCTTATGGGCTGGTGTTTTAAGCGGAGTCACCATGGAGGTTCCTCCACTTCAGGAAGTTAAACATTCTTTCTCCCTTTATTTCCTGGTCCCGGGTGAGTACACACTGGTAGCTGCTGCAGTGATAGATGATCCCAATGACATCCTCAGGGCTCGCGCAAGAAGCGTTTCATCAAATGAGCCTATCTTTTGCCGTGGCCCCCCATTTCATGTCCGTGTGATCGGGACAGCATAA 3171 46.86 MEPDVSIETSSMIRVAVIPVGPVPPNHLRDYSAMLLRHCTISLSTISSFYTEHQKSPFSNQPWDSGSLRFKFMLGGSPSSPWEDFQSNRKILAVIGLCHCPSSPDLDAVVDQFAAACKGYPSALVQRCFGFCPGDSQLEDGSKREGNLILFPPSDRQTQEFHMNTMVQDIAASLLMEFEKWVLQAESAGTILKTPLDSQASLSSEEVIKAKKRRLGRAQKTIGDYCLLAGSPVDANAHYSTALELARLTGDYFWYAGALEGSVCALLIDRMGQKDPILEGEVKYRYNDVISYYRKSFIQDNAQRVSPLSFELEATLKLARFLCRRELAKEVVELLTAAADGAKSLIDASDRLILYVEIARLFGTLGYHRKAAFFSRQVAQLYLQQENGLAAISAMQVLAMTTKAYRVQSRASDSKHSLPSEIGPSYADGGKMHHHSVVSLFESQWSTLQMVVLREILMSSVRAGDPLAAWSAAARLLRCYYPLITPAGQNGLATALKNSSERLPSGTRCADPALPFIRLHSFPLQPSQMDIVKRNPAREDWWAGSAPSGPFIYTPFSKGEPNDTSKQELIWIVGEPVQVLVELANPCGFDLMVESIYLSVHSGNFDAFPIRVNLPPNSSKVITLSGIPTSVGHVTIPGCTVHCFGVITEHLFKDVDNLLHGAAQGLVLSDPFRCCGSAKLRNVSVPQISVVPPLPLLVSRIVGGVGAVILYEGEIRDVWISLANAGTVPVEQAHISLSGKNQDAVISVAYETLKSVLPLKPGAEVTLPVTLKAWQLGLVDPDNAAGKSASGSTGRQSKDGISPILLIHYTGPLTNPGEPPENGSSVPPGRRLVVPLHICVLQGLSLVKARLLSMEIPAHIGENLPKPAELNASIKNLISRIKLRWQSGRNSSGELNIKDAIQAALQTSVMDILLPDPLTFGFKLSKNVPSTSKGSVLAHDMTPMEVLVRNNTMEMIKMRFSIRCRDVAGANCVEGDKATVLWAGVLSGVTMEVPPLQEVKHSFSLYFLVPGEYTLVAAAVIDDPNDILRARARSVSSNEPIFCRGPPFHVRVIGTA* 1057
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5817196 5849576 + Vvi4g538 Vvi4g538 785317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g538 1056 Pfam Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit 9 196 IPR013935 -
Vvi4g538 1056 Pfam Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit 329 742 IPR013935 -
Vvi4g538 1056 Pfam Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit 201 268 IPR013935 -
Vvi4g538 1056 PANTHER TRAPP II COMPLEX, TRS120-RELATED 868 1054 - -
Vvi4g538 1056 PANTHER TRAPP II COMPLEX, TRS120-RELATED 1 864 - -
Vvi4g538 1056 PANTHER TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 9 1 864 IPR013935 -
Vvi4g538 1056 PANTHER TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 9 868 1054 IPR013935 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g538 K20306 TRAPPC9, TRS120; trafficking protein particle complex subunit 9 - vvi:100259475 1718.36
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g538 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed05g1722 . . . . . . . . Bhi09g02968 Tan01g3597 Cmetu07g0381 . Hepe01g1988 Mch11g0525 . . . . . . . . . . . Cme07g00096
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009711 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 1 33