Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g540 ATGCTTGGTGACGAGAAGGAGCTTGATCAGTTCATGACACATTATGTTCTATTGCTTTGCTCCTTTAAAGAACAACTGCAACAACATGTTCGGGTCCATGCAATGGAAGCAGTAATGGCGTGCTGGGAGATCGAACAATCCTTGCAAAGCTTAACAGGAGTTTCACCAGGTGAAGGCACAGGTGCAACAATGTCTGACGACGAGGAAGACCAGATAGATAGTGATGCCAACTTGTTTGATGGAAGTCTGGAGGGTGCAGACAGCATGGGATTTGGTCCTCTTGTCCCTACAGAGAGTGAAAGGTCCTTGATGGAACGAGTAAGGCAAGAGCTGAAGCATGAACTGAAACAGGGGTACAAGGAGAAAATTGTGGACATAAGGGAAGAAATTTTGCGCAAAAGAAGAGCAGGAAAACTTCCTGGTGACACTACTTCTGTCTTAAAAGCTTGGTGGCAATCACATTCTAAGTGGCCATACCCTACAGAGGAGGACAAGGCAAAGTTGGTACAAGAAACAGGCTTGCAACTAAAGCAGATAAACAATTGGTTCATCAATCAGAGGAAGAGAAACTGGCACAGTAACCCTTCTACTTCCACTGTTTTGAAGAGCAAACGCAAAAGTAATGCAGGTGAAAACAGCAGTGGTGATCGGTTCATGTAA 660 44.7 MLGDEKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEEDQIDSDANLFDGSLEGADSMGFGPLVPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKSNAGENSSGDRFM* 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5879264 5888462 + Vvi4g540 Vvi4g540 785319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g540 219 Pfam KNOX2 domain 2 52 IPR005541 GO:0003677|GO:0005634
Vvi4g540 219 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 209 - -
Vvi4g540 219 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 3 2 209 - -
Vvi4g540 219 Pfam Homeobox KN domain 150 189 IPR008422 GO:0003677|GO:0006355
Vvi4g540 219 SMART KNOX2_2 2 53 IPR005541 GO:0003677|GO:0005634
Vvi4g540 219 SMART HOX_1 132 197 IPR001356 GO:0003677
Vvi4g540 219 SMART ELK_2 110 131 IPR005539 GO:0003677
Vvi4g540 219 ProSiteProfiles ELK domain profile. 110 130 IPR005539 GO:0003677
Vvi4g540 219 MobiDBLite consensus disorder prediction 188 219 - -
Vvi4g540 219 Pfam ELK domain 110 131 IPR005539 GO:0003677
Vvi4g540 219 ProSiteProfiles 'Homeobox' domain profile. 130 193 IPR001356 GO:0003677
Vvi4g540 219 SUPERFAMILY Homeodomain-like 132 196 IPR009057 -
Vvi4g540 219 Gene3D - 131 210 - -
Vvi4g540 219 CDD homeodomain 133 194 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g540 Vvi11g601 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14763 PF03791 KNOX2 6.40E-21 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g540 - - pvy:116138005 429.098