Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g543 ATGGGGGGCATGAATGGCAAACCTTCAATGTTGTTTACTACAAGATTTCATAAAGATCATATTGTTCAAAAAGAAAAAAATATTTCCTTCCATCAAAACGAAAAATCGAAGGGCCAAAACCATAAAAAAATTGATTGTCATGCTTCTCAGTGGAAAGATGTGCCTAGCAAGGTGATAGTGTCTTGTGATATGAAATGTGTACGGCCATCAGTTGATGGATTGGGTGGGAGAAAAAATGACGAGGATCAACCTGCAATGTATGGGAGAAAAAATGATGAGGATCAACTAGCAGATACTGCAGCCAAACGCTTTAATGGAAATTTGCAGGAAATTAACTGCTTGAAGGAGCAAGAGATGTCTAATATTTCTTCTGGATGTTCTGCCCCTGCTGTTACTCAGGCATCTATTGAAGTTAATAACATGGATTCTTGTACCGTTGATGCTGGGGATACTGGATGTGCCAATGATCTTGTAGTTGATGAAGCATCTGGAATTGAAAAATGTTGGTCATCTGATGATGCACTTGACAGTGAAAGAAGTGCTGAATTTCTTGGTTTTACATGTAAAACTAGCTTCATAAAAGAAGGATCTTCCAAAGCATTGGCTAATCAATCATCTCGAAGTTTAATTGATGAGCTTAAGTTCAGAGATTCCTTTAGATGGAAGAGAGTACGAAATGAATCCCATACTGGGCTTGCAATTCATGAAAAAAACAGTCATTCACCAAAAATAGAGAGGGGATTGAAAACTAGGAAGAGGAAAAAAACTATGAAAATGAAGATGCTAAATGCATCATTCCCTGCCTCAGGTTTTTCTTCAGGACATTATGAACATACCGAATGTGCTGGTAGTGCTGAATGGCGCTCTTTTTCATACAAAGACGTGGACACGCTTCTTCAATGTGAACTAGGAACATCTCATACATGTGGTGCTTGCACAATTGGACCTAGTTTCAAAAGGCGAAGGTCTACATTGTCTTCTGCCAAAAACTTCTCTCGTAAAAGGGATGTAGACAAAATTTATGCTGATAGAGAAGGGGAAGATGGTTATCAGGCACAATCAAAGGGAAAAACTGAGTTTCTTAGCATCCATGAGGTTTCTGGTGCCAAAAGGATTGGACCAGACCGGACTGCTGAAGCTTTTAGGCAGTTTTGTATGCAAGAACCAAGCCATACAAAAGCTGTGAAGTACAATTCAGTTGGTTGTGTAAAAGAGTCCTCTTGTCTGAAGCTGGATGTTTCTAATAGGAGAGAAAAACCTGTAGTATGTGGGAAATATGGTGTTATTTCAAATGGAAAATTGGCTATAGATGTACCAAAGCCAGCAAAAATATTTTCTCTTAGCAGGGTTCTTAAAACTGCCAGGAGATGTACACTCTCTGCAAATGACGAACCTAGATTAACTTCCATGAGACAGTTGAAGAAGGCAAGGCTCAGAGGAAGTAATGGGTGTGTTAATGAAATCTCCAATTTGATGAAAGAGAAAGAAAATGAAATTCAGAATGCAACCAGATGTGATGAAAGGAATCCTGATAATTCAATGGAAGAAGCTGAGAAGGCAGTCATCAGTGGAGATACAAGATGTGCTGATGAATTGCTCATGTCCAAGCAGGAGAAAGCGTATGGTAGCAAGAAAGATGACAGTTATCATAGCACTCGATTGAAGCGAAAATATAAGGAAATTCGCAAGCGCAGCCTTTATGAGCTAACTGGAAAAGGAAAGAGTCCCAGTTCTGGAAATGCTTTTGTGAAGATACCAAAACATGCACCACAAAAGAAAAGCGGATCTGTCGGGTTGGAGAATGCTGAAGATAGTAAGCATTCCATGAGTGAATCATATAAAGTTAATTCCAAAAAATCCATTAAAGAGCACAGGTTTGAGTCCTTTATTTCAGATACAGATGCATTCTGCTGTGTTTGTGGAAGCTCCAACAAAGATGAAATTAATTGCTTATTGGAGTGCAGTCGTTGCTTAATCAGAGTGCATCAGGCTTGCTATGGTGTTTCCAGAGTTCCCAAAGGTCGTTGGTATTGCAGACCATGCAGGACAAGTTCTAAAAATATTGTCTGTGTACTCTGTGGTTATGGAGGAGGGGCCATGACACGGGCACTTCGGACTCGCAATATAGTGAAAAGTCTTTTGAAAGTATGGAATATTGAAACAGAATCCTGGCCCAAGAGTTCTGTTCCTCCTGAAGCTTTGCAGGATAAACTAGGCACACTGGATTCCTCAAGATCTGGACTTGAAAATGAATCATTTCCTATACATAACACCATAACAGCTGGAATACTTGACTCAACTGTCAAGCAGTGGGTTCATATGGTTTGTGGACTCTGGACACCTGGAACAAGATGCCCAAATGTTGACACTATGAGTGCTTTTGATGTATCTGGTGCTTCACGTCCTAGGGCAAATGTGATTTGCTCAATATGTAACCGACCTGGTGGCTCATGTATAAAGTGCAGGGTTCTGAATTGCTTGGTTCCTTTTCATCCTTGGTGTGCTCACCGGAAGGGGTTGTTGCAGAGTGAGGTAGAAGGTGTTGATAATGAAAATGTTGGCTTTTACGGAAGATGTATGCTTCATGCAGCACACCCTTCCTGCGAATTAGACAGTGATCCCATAAACATTGAAACTGATTCTACAGGAGAAAAGGAACTAACCTGTGCTCGGACAGAGGGATACAAGGGTCGTAAGCAAGAAGGTTTCAGGCACAATCTTAACTTTCAATCAAATGGCAATGGTGGATGCCTTGTTCCTCAGGAGCAGTTAAATGCATGGCTTCATATAAACGGACAAAAGTCTTGCACAAAAGGGCTTCCAAAGACTCCTATTTCAGATGTTGAATATGATTGTCGGAAAGAGTTTGCTCGATACAAACAAGCCAAGGGTTGGAAACATTTGGTGGTGTACAAGTCTGGTATACATGCCCTTGGTCTTTACACATCTAGGTTTATTTCTCGTGGTGCAATGGTTGTTGAGTATGTTGGTGAGATAGTGGGCCTCCGTGTGGCTGATAAAAGAGAAAGTGATTATCAGTCTGGAAGAAAGCTTCAATACAAGACTGCTTGCTACTTCTTTAGGATAGATAAAGAGCACATCATTGATGCTACCCGCAAAGGTGGGATTGCTCGCTTTGTGAATCATTCATGCCTGCCGAACTGTGTTGCAAAAGTAATATCTGTGAGGAATGAAAAGAAGGTTGTCTTCTTTGCAGAGAGAGACATAAACCCTGGAGAAGAGATTACATATGACTACCATTTTAACCATGAAGATGAAGGTAAGAAGATTCCTTGTTTTTGCAACTCAAGAAACTGCAGGCGCTATTTGAACTGA 3336 40.56 MGGMNGKPSMLFTTRFHKDHIVQKEKNISFHQNEKSKGQNHKKIDCHASQWKDVPSKVIVSCDMKCVRPSVDGLGGRKNDEDQPAMYGRKNDEDQLADTAAKRFNGNLQEINCLKEQEMSNISSGCSAPAVTQASIEVNNMDSCTVDAGDTGCANDLVVDEASGIEKCWSSDDALDSERSAEFLGFTCKTSFIKEGSSKALANQSSRSLIDELKFRDSFRWKRVRNESHTGLAIHEKNSHSPKIERGLKTRKRKKTMKMKMLNASFPASGFSSGHYEHTECAGSAEWRSFSYKDVDTLLQCELGTSHTCGACTIGPSFKRRRSTLSSAKNFSRKRDVDKIYADREGEDGYQAQSKGKTEFLSIHEVSGAKRIGPDRTAEAFRQFCMQEPSHTKAVKYNSVGCVKESSCLKLDVSNRREKPVVCGKYGVISNGKLAIDVPKPAKIFSLSRVLKTARRCTLSANDEPRLTSMRQLKKARLRGSNGCVNEISNLMKEKENEIQNATRCDERNPDNSMEEAEKAVISGDTRCADELLMSKQEKAYGSKKDDSYHSTRLKRKYKEIRKRSLYELTGKGKSPSSGNAFVKIPKHAPQKKSGSVGLENAEDSKHSMSESYKVNSKKSIKEHRFESFISDTDAFCCVCGSSNKDEINCLLECSRCLIRVHQACYGVSRVPKGRWYCRPCRTSSKNIVCVLCGYGGGAMTRALRTRNIVKSLLKVWNIETESWPKSSVPPEALQDKLGTLDSSRSGLENESFPIHNTITAGILDSTVKQWVHMVCGLWTPGTRCPNVDTMSAFDVSGASRPRANVICSICNRPGGSCIKCRVLNCLVPFHPWCAHRKGLLQSEVEGVDNENVGFYGRCMLHAAHPSCELDSDPINIETDSTGEKELTCARTEGYKGRKQEGFRHNLNFQSNGNGGCLVPQEQLNAWLHINGQKSCTKGLPKTPISDVEYDCRKEFARYKQAKGWKHLVVYKSGIHALGLYTSRFISRGAMVVEYVGEIVGLRVADKRESDYQSGRKLQYKTACYFFRIDKEHIIDATRKGGIARFVNHSCLPNCVAKVISVRNEKKVVFFAERDINPGEEITYDYHFNHEDEGKKIPCFCNSRNCRRYLN* 1112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5937870 5970124 - Vvi4g543 Vvi4g543 785322

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g543 1111 SUPERFAMILY SET domain 958 1107 IPR046341 -
Vvi4g543 1111 SUPERFAMILY FYVE/PHD zinc finger 625 688 IPR011011 -
Vvi4g543 1111 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE TRITHORAX 13 1111 - -
Vvi4g543 1111 CDD ePHD 770 850 - -
Vvi4g543 1111 ProSiteProfiles Extended PHD (ePHD) domain profile. 735 863 IPR034732 -
Vvi4g543 1111 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 13 1111 - -
Vvi4g543 1111 SMART set_7 966 1093 IPR001214 GO:0005515
Vvi4g543 1111 ProSiteProfiles Post-SET domain profile. 1095 1111 IPR003616 -
Vvi4g543 1111 Pfam SET domain 979 1086 IPR001214 GO:0005515
Vvi4g543 1111 MobiDBLite consensus disorder prediction 570 611 - -
Vvi4g543 1111 ProSiteProfiles SET domain profile. 966 1087 IPR001214 GO:0005515
Vvi4g543 1111 SMART PostSET_3 1095 1111 IPR003616 -
Vvi4g543 1111 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 621 697 IPR013083 -
Vvi4g543 1111 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 752 866 IPR013083 -
Vvi4g543 1111 Pfam PHD-zinc-finger like domain 766 849 - -
Vvi4g543 1111 Coils Coil 485 505 - -
Vvi4g543 1111 Pfam PHD-finger 649 682 - -
Vvi4g543 1111 CDD SET_SETD1-like 968 1107 - -
Vvi4g543 1111 Gene3D SET domain 867 1111 IPR046341 -
Vvi4g543 1111 ProSiteProfiles Zinc finger PHD-type profile. 634 684 IPR019787 -
Vvi4g543 1111 ProSiteProfiles Zinc finger phorbol-ester/DAG-type profile. 623 678 IPR002219 -
Vvi4g543 1111 SMART PHD_3 636 682 IPR001965 -
Vvi4g543 1111 SMART PHD_3 807 863 IPR001965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g543 - - - vvi:100255892 2258.03
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g543 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023745 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14764 PF00856 SET 8.20E-18 No_clan Vvi TR