Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g547 ATGGGTAGTACTGGTGGTGATGAAGTAATGATTTCTGGGAGTGGTGAGGCTCAATGTTCCGAGGCCACTGTTGAGATAAAAATAAAAACACTGGATTCTCAAACATATACTTTGCGAGTGGATAAATGTATGCCAGTTCCTGCTTTAAAAGAACAAATTGCTAGTGTTACCGGTGTGTTATCCGAACAACAGCGCCTCATATGCCGTGGAAGGGTTTTGAAGGATGATCAACTCCTCTCAGCTTACCATGTGGAAGATGGTCACACATTGCATCTTGTTGTTAGACAACCATTTCCGCCATCATCAGAGAGCTTGCCTGATAATTCAGCCACAGATCCTGCATCAAATACTCTTCGTAATCAAGGTTTTCATGTAGGTTCTAGTGTGGTAGTTTTGTCCGAGCAAGGGGATGGAGTTCCAGATCTCAGTCGGATTGTCTCAGCTGTTCTCAGTTCTTTTGGAGTCAATAATGTTCGAAGTGGCAGTGAAGGGGCTGACCCTAGGGATCCTGTCCCAGAGAGGGGCTCAGGAACTCCTGGTTTAAGTGGCTTGAGAGACTCTAGCAGACAGCAACCTAACCAGGCTGCTACAATTGATCAGTCTAATCCTCTCAATGGTGCTTCTTTGCTTCCAAATGATGTTACCTTGGAGCAGCTGCAGCCACCGGTGATTCCTGATTCTTTGACAACTTTGTCTCAGTATTTGCGGAATATGAGACATGAATTTGGTGGCAGTGTCAGAGGCCATGGCAATAATTCTGCTGCTGGAATTCATGGTTGTGATGTACAAAACTCTGAGGCTACCTTGCAGTCAGATGTTACACAAGGAGGACTTCCAACACCTGCTTCCTTGGCAGAAGTGATACTTTCTACTAGACAAATACTCATTGAACAAGCTGCAGAGGACCTCTCACAACTCACAAGACAACTAGAGAATCATGCAAATGTGACTGATCCTTTAGCACGGAGGAGCATCCAATCCAATGCCTTGAGATTAGGAGCCATCTTGCGAAATTTAGGTGCTTTGCTGCTTGAGCTTGGTCGAACAACCATGACATTGCGAATGGGTCAAACACCGAATGATGCTGTGGTTAATGCTGGACCTGCACTCTTTATATCCACATCTGGTCCCAATCCTATAATGGTTCAGCCACTTCCTTTTCACCCGGGAACAAGTTTTGGGGCCATACCCATGGGAACTGTTCAACCTGGCTCTGGTTTCTCTAGTGGTACTCTTCGTTCTGGTTTTCTTCCAAGGAATATTGACATTAGAATTCGTACAGGTTCAATGATGCCCCCGTCTGTTATTAACCAAAGGGAACCTGCTGGTGGTCAGACATCCCAAGGGCAAACAAGCCCAGCACTTTCTGGTGGTGTTAATTCCATTCACCAACCTGCTGCGGGAGCCTCTAGGAGTTCATCTTCAACCAGGGAGGCTGAAGTACGGGTTGTGCCCATTAGGACAGTGGTCGCTGCAATACCTGCTGCTGCCAGGCACTCACCTTCTGATTCATCTCGCAGTTCAATGGGATTATTTTATCCAGTTCTAGCCAGAGTTCAACATGTAATGTCTGGAAATTATAATGGTGCAAGAGGTTCTCAAGCATCTGATGAACATCAACCTAGGGGTCTAGGCGCACAGCAGCAATCAGTTCCTGAATCTGCATCACAACAGAACATTGAATCTCAAGGTAGAGATGGTAAGTGCTATACAACAACTTGA 1722 45.82 MGSTGGDEVMISGSGEAQCSEATVEIKIKTLDSQTYTLRVDKCMPVPALKEQIASVTGVLSEQQRLICRGRVLKDDQLLSAYHVEDGHTLHLVVRQPFPPSSESLPDNSATDPASNTLRNQGFHVGSSVVVLSEQGDGVPDLSRIVSAVLSSFGVNNVRSGSEGADPRDPVPERGSGTPGLSGLRDSSRQQPNQAATIDQSNPLNGASLLPNDVTLEQLQPPVIPDSLTTLSQYLRNMRHEFGGSVRGHGNNSAAGIHGCDVQNSEATLQSDVTQGGLPTPASLAEVILSTRQILIEQAAEDLSQLTRQLENHANVTDPLARRSIQSNALRLGAILRNLGALLLELGRTTMTLRMGQTPNDAVVNAGPALFISTSGPNPIMVQPLPFHPGTSFGAIPMGTVQPGSGFSSGTLRSGFLPRNIDIRIRTGSMMPPSVINQREPAGGQTSQGQTSPALSGGVNSIHQPAAGASRSSSSTREAEVRVVPIRTVVAAIPAAARHSPSDSSRSSMGLFYPVLARVQHVMSGNYNGARGSQASDEHQPRGLGAQQQSVPESASQQNIESQGRDGKCYTTT* 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6044777 6059248 - Vvi4g547 Vvi4g547 785326

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g547 573 MobiDBLite consensus disorder prediction 101 120 - -
Vvi4g547 573 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 1 569 - -
Vvi4g547 573 MobiDBLite consensus disorder prediction 527 573 - -
Vvi4g547 573 MobiDBLite consensus disorder prediction 156 209 - -
Vvi4g547 573 Gene3D - 17 119 - -
Vvi4g547 573 MobiDBLite consensus disorder prediction 181 209 - -
Vvi4g547 573 PANTHER SCYTHE PROTEIN UBIQUITIN-LIKE DOMAIN PROTEIN 1 569 - -
Vvi4g547 573 CDD Ubl_ubiquitin_like 26 93 - -
Vvi4g547 573 MobiDBLite consensus disorder prediction 430 481 - -
Vvi4g547 573 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Vvi4g547 573 MobiDBLite consensus disorder prediction 96 120 - -
Vvi4g547 573 SMART ubq_7 24 95 IPR000626 GO:0005515
Vvi4g547 573 SUPERFAMILY Ubiquitin-like 12 111 IPR029071 -
Vvi4g547 573 MobiDBLite consensus disorder prediction 431 479 - -
Vvi4g547 573 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Vvi4g547 573 PRINTS Ubiquitin signature 34 54 IPR019956 -
Vvi4g547 573 PRINTS Ubiquitin signature 55 75 IPR019956 -
Vvi4g547 573 PRINTS Ubiquitin signature 76 97 IPR019956 -
Vvi4g547 573 Coils Coil 296 316 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g547 - - K23390 vvi:100249152 1058.13
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g547 Vvi11g585 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g547 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed01g2452 . . . . . . . . Bhi09g02931 Tan01g5081 Cmetu07g1738 . . Mch11g0072 . . . . . . . . . . . Cme07g00072
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004270 2 3 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 1 43